RNA id: CI01000069_04983344_04983640.mRNA


Basic Information

Item Value
RNA id CI01000069_04983344_04983640.mRNA
length 319
RNA type mRNA
GC content 0.45
exon number 1
gene id CI01000069_04983344_04983640
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4983322 ~ 4983640 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGTCCATTGAAAGCACAGTTCAGAAAAAGCCTGGAGAAACTCTGACTCTGTGCTGTAGAGGATCCGGGTTCAGCTTTAGCTGCTGTGCTATGCACTGGATCAGACAACAAGCTGGAAAACCTCTTGTGTGGATGGGTCTGGGCTACAGTTCAGGAAGTGGACATAAGGCGGAATCCTTTAAGCAGAGACTTGAAATCACCAGAGATGATTCAAAAAGCATGATGTATCTAAAACTGTCTGGACTGACAGAAGAGGACTCAGCTGTGTATTTCTGTGCAAAACAAGCACAGTGACACAAACATATGCGGAAATAAT

Function

GO:

id name namespace
GO:0009897 external side of plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313192 lncRNA downstream 190519 4791382 ~ 4792803 (-) False G276071
TU313193 lncRNA downstream 190619 4791382 ~ 4792703 (-) True G276071
TU313236 lncRNA downstream 272360 4704052 ~ 4710962 (-) True G276114
TU313216 lncRNA downstream 279853 4699271 ~ 4703469 (-) True G276094
TU313255 lncRNA downstream 313511 4669332 ~ 4669811 (-) True G276133
TU313229 lncRNA upstream 20739 5004379 ~ 5009473 (-) True G276107
TU313318 lncRNA upstream 75693 5059333 ~ 5059568 (-) True G276193
TU313225 lncRNA upstream 102477 5086117 ~ 5089577 (-) True G276103
TU313200 lncRNA upstream 110478 5094118 ~ 5096986 (-) True G276078
TU313217 lncRNA upstream 154718 5138358 ~ 5152509 (-) True G276095
CI01000069_04942590_04973602.mRNA mRNA downstream 9659 4942411 ~ 4973663 (-) False CI01000069_04942590_04973602
CI01000069_04932463_04940554.mRNA mRNA downstream 42174 4932144 ~ 4941148 (-) False CI01000069_04932463_04940554
CI01000069_04919538_04930550.mRNA mRNA downstream 52772 4919019 ~ 4930550 (-) True CI01000069_04919538_04930550
CI01000069_04802439_04905601.mRNA mRNA downstream 77436 4801597 ~ 4905886 (-) True CI01000069_04802439_04905601
CI01000069_04692723_04695795.mRNA mRNA downstream 286755 4692492 ~ 4696567 (-) True CI01000069_04692723_04695795
CI01000069_04985959_04986408.mRNA mRNA upstream 2053 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_04996783_05001227.mRNA mRNA upstream 12700 4996340 ~ 5001227 (-) True CI01000069_04996783_05001227
CI01000069_05025745_05032197.mRNA mRNA upstream 41657 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
CI01000069_05042346_05044105.mRNA mRNA upstream 58635 5042275 ~ 5045235 (-) True CI01000069_05042346_05044105
CI01000069_05100248_05121420.mRNA mRNA upstream 116427 5100067 ~ 5121420 (-) True CI01000069_05100248_05121420
TU313201 other downstream 41123 4942073 ~ 4942199 (-) True G276079
TU312842 other downstream 1176245 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1214102 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1406987 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 1556948 3426149 ~ 3426374 (-) True G275755

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051755 True 349 mRNA 0.42 2 NC_007114.7 34113410 ~ 34113838 (-)