RNA id: CI01000069_04996783_05001227.mRNA


Basic Information

Item Value
RNA id CI01000069_04996783_05001227.mRNA
length 1384
RNA type mRNA
GC content 0.48
exon number 7
gene id CI01000069_04996783_05001227
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4996340 ~ 5001227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATTGCGCCATCTGGCGTTCGCGTCTAGTTTCACCATGTGACAGTGGATCCGCTTCACCAGAGCCCCTCCATAAGAGGAGCCTTCAAAGTCAGCTAAACCGGGTCGGGACCTTTCCTGTTCTGTTTGAATGGAAGCAACGGAGATGTAGGGTCTTACAATGTGGCGTTTCTGCACTCAAAGTCAATCGGTCCATTCATCAGAGTGCGCCATGGAGAAGTCCACTCATACCTATAGTTGTGGAGCAGACGGGACGAGGAGAGCGTGCTTATGACATCTACTCAAGGCTGCTCCGAGAGAGAATCATATGTGTTATGGGTCCAATCGATGACTCTGTAGCTTCTCTGGTTATCGCTCAGCTGCTCTTTCTCCAGTCAGAGAGCAACAACAAGCCCATTCACATGTACATCAACAGTCCTGGTGGTGTGGTTACGGCTGGACTTGCGATCTATGACACTATGCAGTACATCTTAAATCCCATCTCTACCTGGTGTGTGGGCCAGGCTGCCAGTATGGGCAGTCTGCTTCTGGCCGCAGGAACCGCAGGCATGAGGCATTCCCTGCCTAATGCCCGAATCATGGTGCACCAGCCCTCCGGAGGGGCAAGGGGGCAAGCAACCGATATTGCCATCCAGGCTGAGGAGATTCTCAAACTGAAAAGACAGATCAACCACATTTATTCCAAACACACAGGGCAGAAATTGGAGCTTATAGAGAGCGTGATGGAGAGAGACCGGTACATGAGCCCGATGGAAGCACAGGATTTCGGGATTATCGACAAGGTCCTGGTTCATCCACCACAGGCTGGGCAAGACGAGCCAGAACTTGTTCAAAAAGAACCCACTAGCCCTGCAAACGCCTCTACTTCCCCTCAGCCTCAAGCGTCTGAGCCGGGCCAGTCCGGCAGCAACCCTCCCTCCTCGTACAAACCTGAACCCTGAAATAGACTCCCTGCAGGAGCGAGTAAACTACTGCACCGCTGGTTCAGTGTCTCTTTTGGCAGACAGTCACCAGCTCACACATCATATCTGAACCCCGTGACCTTCCTTTTGTATCATTCATTTTATTAAGACTCACTAAGTCTAGTCCTGAGACGCAGTACTGGAATCTGGACATTACAGTCGCCAGTGTAATAACACTCAGTCTGCCCTCATATCTGTATGCGGCAAATATAGATGTCTTAGCAAAAACTAGGTTCATTGTAAACAAGCTAGACGGGAACACAAGATTACAGTACAGGGTTTGATGTCTGTATAATATTTGGGTGAAATGTGTTACCATGTCACACAATATATTTTGAATTGTAAATGTGCCCCTCAGTTTAATATAATCCCTGTCAAAATGATTTGAAGCAAGAGTGTTTATAGATAATGATTCAAATAAA

Function

GO:

id name namespace
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313192 lncRNA downstream 203537 4791382 ~ 4792803 (-) False G276071
TU313193 lncRNA downstream 203637 4791382 ~ 4792703 (-) True G276071
TU313236 lncRNA downstream 285378 4704052 ~ 4710962 (-) True G276114
TU313216 lncRNA downstream 292871 4699271 ~ 4703469 (-) True G276094
TU313255 lncRNA downstream 326529 4669332 ~ 4669811 (-) True G276133
TU313229 lncRNA upstream 3152 5004379 ~ 5009473 (-) True G276107
TU313318 lncRNA upstream 58106 5059333 ~ 5059568 (-) True G276193
TU313225 lncRNA upstream 84890 5086117 ~ 5089577 (-) True G276103
TU313200 lncRNA upstream 92891 5094118 ~ 5096986 (-) True G276078
TU313217 lncRNA upstream 137131 5138358 ~ 5152509 (-) True G276095
CI01000069_04985959_04986408.mRNA mRNA downstream 9932 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_04983344_04983640.mRNA mRNA downstream 12700 4983322 ~ 4983640 (-) True CI01000069_04983344_04983640
CI01000069_04942590_04973602.mRNA mRNA downstream 22677 4942411 ~ 4973663 (-) False CI01000069_04942590_04973602
CI01000069_04932463_04940554.mRNA mRNA downstream 55192 4932144 ~ 4941148 (-) False CI01000069_04932463_04940554
CI01000069_04919538_04930550.mRNA mRNA downstream 65790 4919019 ~ 4930550 (-) True CI01000069_04919538_04930550
CI01000069_05025745_05032197.mRNA mRNA upstream 24070 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
CI01000069_05042346_05044105.mRNA mRNA upstream 41048 5042275 ~ 5045235 (-) True CI01000069_05042346_05044105
CI01000069_05100248_05121420.mRNA mRNA upstream 98840 5100067 ~ 5121420 (-) True CI01000069_05100248_05121420
CI01000069_05227862_05278522.mRNA mRNA upstream 226635 5227862 ~ 5278522 (-) True CI01000069_05227862_05278522
CI01000069_05321785_05324036.mRNA mRNA upstream 320044 5321271 ~ 5324097 (-) True CI01000069_05321785_05324036
TU313215 other downstream 9916 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408
TU313201 other downstream 54141 4942073 ~ 4942199 (-) True G276079
TU312842 other downstream 1189263 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1227120 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1420005 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051758 False 1179 mRNA 0.48 7 NC_007114.7 34129513 ~ 34136372 (-)