RNA id: CI01000069_05042346_05044105.mRNA



Basic Information


Item Value
RNA id CI01000069_05042346_05044105.mRNA
length 1855
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000069_05042346_05044105
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5042275 ~ 5045235 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGCACAAAAATACAAATGCAATTCAACCTCTCCACACTACTACTCTTCCCCCTAAAATGGCTGCCTGGAGCTCTTTTATAGGCATTGGCTCCTCCCACCTTTGGAACATACCATTTTAGGGGGAAACCTATATGTTACAAAGAGGTGACAGGACTTAAACAAACAGACATTCATTACATTTCAACTCTACAGCATGCAACATTTACATCAATTAACATTTAAATGATTCAAGACAATTAAGACATTTAAGGAAATACTTAAATCCCACGTTCTCCCCCTCCCCTATGTGGTCAGAACCAGATGGAGTAATCTTCCATGAGAAAATAGGCTTGTTCGAGATGCATTGGCGCTGTGCAGACTGATTGGTGTATGACATCAAAGTAACACAAGAGCGATTCAAAAGTAGTCGTATGCTCTCCAAACGCTCTCGCGGTACTTTGATGCTATACACCGATCGGTCTACGCAGCGCTGATGCATCTCGAACAAGCCTAATGTTAGGTTTAAATATGGCTTCTTTCCATGTGTACAGGTTTGGCAATTGAGAGGTGAACCAGAAGGTATGTATAGCTGAAATGAAATGAAACTAACAACTTGGGACAATTAATAAGATGATACAACACCAAAATCGAGCTACAAACACACAACTACAAAAGGATTGCATAATGGTGGAAACAGTTTGTGTGTGCACATACCCACGCTCAGTCCCTTCATAATAAAAGTGCCTTTCCCAAGTTTTTTACTGCTTTGCCCCGGGTGAGCCTGCTAACATAGCAGCTGAACAGCACACCTTCAGTAAATTATGTTTTATTTACAAAGTTCAGGAGGAGCATGGTCAAATAATCTATCCAATCATCACGTCATCTCAACCAGCTGTCAACAGTCAGTAATCAACATATCTACACAATCAGCATGAGTGCAGGCCTATATGCCTATATGGGGGGTACTCTGGGTTCGGGCCAAATACCGAGGTCGGAGCCCTCTCCCCAGACAGCATGCCAAATATCCATACCATGTATTCTATCTGACTTATTTGTAAGTGTGAACTCGTGAAACTAGACAGTTTTACAGTATGTTGTTGCTTTGCGAGAGCTTGATGTTTCATGTGAGTTTGGTGCCAGTACTGATAAAATGAATCACAATCAGTTAGTGGAGAATGTGCTTAGCCCACAAATACTTGAGAGAATTTTACTAGAAACTGATCTCACACTAGACAGAGCTGTTACAATAGCAAGCCAGATGCTGCCGATCAGGCTACATCCATTTCACACTCCCGCCAAGTTACCGCCCCCGTACAAGCAGTGCAGCACACGGGAATATTCAGCTCGTACTCCCAACATTATAAGCACAGTGACTATACCTACTTCTGACTCACAGACTTGTGTGGTGGATTTGGGGATCGACACTGGGTCTTCCGTATCTATTCTGCCCTACAGCACTTATGCATGCCATTTCAGTAACATTGTGCTGTCTCAACTCACTGCCAGGCTTGTGACATATTCAAAAACCCAAATTCCAGTGTCTTTTTGTGGACTTTTTCTGAGTCACTGTGTAAAGCTGGATGAAACCGTCACACCTGTGTGCCAAAATCTTTGCCGTCTGCCACTGTCTGTTCATCTCTGCATGGGTGTCACCAATTGTTGTTACGCAGAAAAAAAGTCAAATAATGCTGCTGCTCCAGTTCCTGTTGATGATGTTGATGTTGATGAGGAGTTTGTTGCTTTTCTATCTGCTGCCTGTCTGCTGCTGATGTTGATGCTGCATGTGCTTCTTGCCCTGCTCTAACCAAACTTTGTACACAGATGTCTAATGCTTCACCCAACAGACAGGACATTGAGTTGTTGCCATACTATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313229 lncRNA downstream 32802 5004379 ~ 5009473 (-) True G276107
TU313192 lncRNA downstream 249472 4791382 ~ 4792803 (-) False G276071
TU313193 lncRNA downstream 249572 4791382 ~ 4792703 (-) True G276071
TU313236 lncRNA downstream 331313 4704052 ~ 4710962 (-) True G276114
TU313216 lncRNA downstream 338806 4699271 ~ 4703469 (-) True G276094
TU313318 lncRNA upstream 14098 5059333 ~ 5059568 (-) True G276193
TU313225 lncRNA upstream 40882 5086117 ~ 5089577 (-) True G276103
TU313200 lncRNA upstream 48883 5094118 ~ 5096986 (-) True G276078
TU313217 lncRNA upstream 93123 5138358 ~ 5152509 (-) True G276095
TU313328 lncRNA upstream 109801 5155036 ~ 5155302 (-) True G276200
CI01000069_05025745_05032197.mRNA mRNA downstream 10078 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
CI01000069_04996783_05001227.mRNA mRNA downstream 41048 4996340 ~ 5001227 (-) True CI01000069_04996783_05001227
CI01000069_04985959_04986408.mRNA mRNA downstream 55867 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_04983344_04983640.mRNA mRNA downstream 58635 4983322 ~ 4983640 (-) True CI01000069_04983344_04983640
CI01000069_04942590_04973602.mRNA mRNA downstream 68612 4942411 ~ 4973663 (-) False CI01000069_04942590_04973602
CI01000069_05100248_05121420.mRNA mRNA upstream 54832 5100067 ~ 5121420 (-) True CI01000069_05100248_05121420
CI01000069_05227862_05278522.mRNA mRNA upstream 182627 5227862 ~ 5278522 (-) True CI01000069_05227862_05278522
CI01000069_05321785_05324036.mRNA mRNA upstream 276036 5321271 ~ 5324097 (-) True CI01000069_05321785_05324036
TU313215 other downstream 55851 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408
TU313201 other downstream 100076 4942073 ~ 4942199 (-) True G276079
TU312842 other downstream 1235198 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1273055 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1465940 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352

Expression Profile