RNA id: CI01000069_05046565_05048523.mRNA


Basic Information

Item Value
RNA id CI01000069_05046565_05048523.mRNA
length 1699
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000069_05046565_05048523
representative False

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5045967 ~ 5049408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAATGAGGAGAGAGAGAGAGTGATGAGAGAGAAACACAGGGGAAGGGGGTAAGTATAAAAATATAAATGTCTGTCTGGAGTGTGAAAATGTTTGAAGATGGGAGGAAATACAGACGGAACAGGCACCCAAAAGAGAGTGAGAAAAAAAGGGTGCGCAAGAGAGTAGGGTGGGGATGAAGGGGGAGGGAAGGAAATGAAGAGTGAGGGAGGGAGAGAGAGAGAGAAGCAGAGGGAGAGGGAGAGGGAGAGGGGGAGGAGAAGGAAGCAGAGCATTCACAATTTTCATTCAAACTGACACAGCCCGTGTATCCCGGTTTGCACTCCCCACTCCCTCTCTCTACACGCACACATACACACAGAGAAAGAGAGAGAGAGAGAGAGAAACACCAGACCGTCTGCAGTTAAGTTAACAGTGGCTAGAGGACAGCTTCAAGAAGAGTGAGAGACCGGGACGAGAAAACCCGAGGAGACCGGCGGAAGTGGTGAGAATAGAAAGAGGAGGTATGGAATTCACAAAGAGATGTCAGGGTGGAAGGTGAGTAGGGAGAGGACGAAGAGTTTTAAAATAGAAGAGAGAAAAAGGGAGGTGGAGGAATGCAGGGGTGGAACGGCCGAGCTCGACGTATGGAGGGGGGCAGAGATCGACTGGAGCCAGACTGGGTGTATGCATCTGAGAGAGTCACTGTGCAACCCCCTGTTCCCGCTCACTCTCAGCTCCTGGTCCCTTCCCCCCACGATCAGATAATAGACCCCACAGAGCTCATGCTATACTTCATGCAGAGCTCTGCGCCCACTTCCCTGTGCATTTGACCAGATCTCCACAGCCCCCAGTGCTCACACAAAACTTCCCGTCAGCGACTGTGAGTGCACAGTCCCATATGGCTCAAAAATGTATTTGTCCTGGCCAAAATATATGCTAAATACATGCTTAAGGACATGTATTTTTCAAATCAACAAAATTTACTGCAATATGTAATGCAATATTGCAATGTATTTTAGGGGGCAAGAAAACACATTCAGTCTTAAAATGCTGCACTTTGGGTAAATGCAAAATGTTTGTGCATATATATATATATAATATATATCTGCAACTTTTTTACTGTGGGGATGGGTTGTAGATTTGTTAATGTGGTTAACATAATTGAAACTAGTTGGGGTGGGAATGTAAGAAATATCATGTGAGGTACATAACTGTGTTCATGTCAATTTTTTAATGTGCATGTCTAAAATCACACAATTCCAGCAGAATCCAAAGTATGTGTCAGTCCCAGTCGAGTCTCAGTGAACATTCAACGCTGTCGGTGAGTTTGCAAGTCAAAGAAACCATCGAGTGTTGAGTGTACCCTGCCTCTTGAACACACTCCGACCACATAGACCTTCTGAGTGCCAGCAACTACATGTGTGAGTCCATTTTGTTGCTGAGCTGGCCAAGATGGCTGCTGTAGTGTCTCTAAAGCTGTCCCAGCTGATCAGTGAAGCGAGAGACTGTATTCTGCATCTACTGTCACAGCTCTGAGTCCTGATTCACATTCATTGCTGTCGGTGGGTTTTATCTCTGACTCGCCGGACAATGAATGAGAACTATGGCCCTTCCTGCACTAATGTATACCAAAGCTGTGGGTTGAGAAAATAAGGACTGTTAATCTTTTTCACTATTAGACATGTCACTCAACCCATGTACATCAAAGAAGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312054 lncRNA upstream 6052 5039622 ~ 5039915 (+) True G275048
TU312053 lncRNA upstream 6500 5039049 ~ 5039467 (+) True G275047
TU312023 lncRNA upstream 41656 5001806 ~ 5001958 (+) True G275021
TU312016 lncRNA upstream 57977 4987765 ~ 4987990 (+) True G275017
TU312006 lncRNA upstream 59700 4969222 ~ 4986267 (+) True G275008
TU312036 lncRNA downstream 36626 5086034 ~ 5090665 (+) True CI01000069_05086587_05092363
TU312024 lncRNA downstream 44704 5094112 ~ 5096981 (+) True G275022
TU312084 lncRNA downstream 68334 5117742 ~ 5117956 (+) True G275065
TU312037 lncRNA downstream 114372 5163780 ~ 5164576 (+) True CI01000069_05150719_05164593
TU312106 lncRNA downstream 122458 5171866 ~ 5172982 (+) False G275085
CI01000069_05033299_05034403.mRNA mRNA upstream 11362 5033299 ~ 5034605 (+) True CI01000069_05033299_05034403
CI01000069_05002707_05021316.mRNA mRNA upstream 22885 5002707 ~ 5023082 (+) False CI01000069_05002707_05021316
CI01000069_04990240_04994522.mRNA mRNA upstream 51098 4988735 ~ 4994869 (+) True CI01000069_04990240_04994522
CI01000069_04981836_04982608.mRNA mRNA upstream 62871 4980959 ~ 4983096 (+) True CI01000069_04981836_04982608
CI01000069_04917103_04918567.mRNA mRNA upstream 127066 4917103 ~ 4918901 (+) True CI01000069_04917103_04918567
CI01000069_05064327_05071992.mRNA mRNA downstream 14708 5064116 ~ 5072032 (+) True CI01000069_05064327_05071992
CI01000069_05077178_05084933.mRNA mRNA downstream 27770 5077178 ~ 5085462 (+) True CI01000069_05077178_05084933
CI01000069_05086587_05092363.mRNA mRNA downstream 36876 5086284 ~ 5092572 (+) False CI01000069_05086587_05092363
CI01000069_05097987_05099733.mRNA mRNA downstream 48579 5097987 ~ 5099841 (+) True CI01000069_05097987_05099733
CI01000069_05150719_05164593.mRNA mRNA downstream 98651 5148059 ~ 5165388 (+) False CI01000069_05150719_05164593
TU311947 other upstream 119280 4924467 ~ 4926687 (+) True G274953
TU311605 other upstream 487487 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311582 other upstream 912589 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 1242466 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 1407537 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050323 True 78 miRNA 0.50 1 NC_007114.7 34197694 ~ 34197771 (+)