RNA id: CI01000069_05150719_05164593.mRNA


Basic Information

Item Value
RNA id CI01000069_05150719_05164593.mRNA
length 4016
RNA type mRNA
GC content 0.39
exon number 5
gene id CI01000069_05150719_05164593
representative False

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5148059 ~ 5165388 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAGACCCCTGTCATTATACTCAAATCACGTAGGTCTTTCAGCGATTGCACATTTGTCTCAATAAAATGCAAAACATCTAACAGTTCAGCACACTAATGGACTTAGCATAAGGGGAAACTCTTGTAACGGGGGACTAAATTGAGAGTGATCAGTTCTGAGGTTATTAGTGATGCATCAAGGGGGAAAAAAAGTTGTCAAATGAATTTTAGTGAGATTAGTACAAACCCTGTACTTAGCCATGGCCTTTCATTCTTCATTCTTTCAATTTCCAGAGAGCTTTACGCTGGACCTATGAAACCTTAAAGGGATAGTTCACCCAAAAATTTAAATTGTCATCATTTCTCTTGTCATTCCAAACACGTATGACTTACTTTCTTCTGTGGAACACAAAAAAGATAATGTGAAGATTGTATCAGTGTTTTTATCTATTCAATGAAAGTCAGTGGGGTCCAATGTTGCTTCGAATTTGTTCACAGTATCAATGGGTGAACTATCCCTTTAAGGCTTAAAGAGACCAGACATGCCCACAAATTGTCCACAATACATTCACTGACCATCTAATGCATGCTGCACACAATACTTGTAAAAATAATAAGCTTTAATCAGACTGAAGACTGCTACGCAACCTTTCAAAAAAGAAATGATTAATTATTTATAAAATATAATAAATATATATAAAAGCACAAGATATTTAGAGTTTTGTTTAAGGCACTTTATAGTAAGCAAACTAGGTATCTAGCTTTGTTTGCTGCCTGTGAAATAATCAATATTAACTACTTTTGAGGAAACAAAAACATAGACAGAGAAGTCTAAACACATTTCAACAGTTCAGGGAGACTGTCATCATGGCTTATTCTGAATAAGATTTATCTGTGCCTTTCTATTATTGTGGTATTCATCCATTGCAGATTTACCCACCCCTAAACACCACAAACTGTGGCTCGCTTTACAAGTCGGTCAGAGAGCCTCTTCCTGTCTAAGTGGGCAGAATAAGCCACAAATATTCTAAACAACATAAAACGTGAATTTCAGATGAACTATCAAATAACTGTTACTTTCAGCACCTCACAATTGCTCTAGAACAGTGTACGAGTTATAGACTCCATTATAGACAGACTCCCAGCCATATGTGTTATTAAAATTTATGATATTAAGACATCCTGACAGGTTTGATGAACAGGAAGGACTATACTCCTTTACTGTAACTGAGGGCTGCCATTTTGCAGGCAAGCGAGCAGGTGAAATGTTGCATTCTACGAATAAAACGTGCCTTTCAAAAGGTTAATGAATTCAGATAACTGCTACAAGTGTGTCTCAGAGAGGCAAACTTGCCCTTGAAAGACTCATCGGAGCATCCCTTTGGCCTGCAGTTTTCAACCAATCAAAAAAAGAATGTAAAGCAAATGCCAAAAACACATCCTGAAGGTTCAAAAACTCAACTTCCTTTCATCAGACCTGCATGAATGGAGAAAACAGCATAGAATAAAGCATGCAAAACATAAAAGTATCTCTAGTACATTAATATCATCTATTATGATGAACAAGTCAGTGGGACAGTCACAATCTTCAGAGATCAGCATAAATCTCACTTTGGGAATGACAGCTGTTGGTTAGTGTCTTCTGTCCAAACAAATAAAATGACTGTGCTATTGATGAGCCAGGTTGATTCAAGGCATTGATGTCAAAGCTTGACAAGACACCAAAATCTGCACTGTGCAAAACATTAGCAAAAGACAGTAAATACCAAAAATCTAGAAAAACATTACAAAATGTTTCAAAGTGGCTCAGAAAGGAACGTGGGAATTAATGACATATTTGCTCAGCTATAAGCGTTACGAGTCTGACACCAGTGAGGAGCCTCTATTTTATATTAGAATACAGATGCTAAACTGATACATGTGCCAACAGCGCAAAGTGCCACATCACCAAGTGTAGAAAATAGCAACATAGTTTCAGGTGTAAAATGTGTATACCAGAAAATTAAACACGCGCACACACACAAAACAGAAAATTACAGTTGTTCGCAGGCAAAGAGATAAACACCTGCATGTAGCGCTAGCTTCACAGTAATTTGTTTGAAAAATAAAATGGCAATGATTTTACTTCAACAAAACTCTCTACTGTTTTAAATTTTATTTTTATTACAATTAGCATTAGTTATACTTTCATTCTGTTTTTGTAACATATCATGATTTTTGGCTTTTACAGAAACCGGTTAACCCCATCATTGATCTAACCATGGAAATGACAAGCAATCCATGGTTTTATCTGTGGTTACTATGGTCTTGTTCAAAATGCCACAGTTTCTATACAGGAACTAAGTTTCATAAGGGAATCAGACACCAGACTCAGCAACAATGATTCCACTTCAATAACCAAAAGCTACAAATGACCAAACATGAAGCCACATGGTGTAAATCCCAAGCCACAATAATGCTGGTAAGGCTTTATAAGAACAAGCTGAGAGGGGCAATGTGACCTAAGCTTTATGGTAATCTGAGCATTAAGTGGCCTCTTTTTGTCTGACCCTTTTCACTCCTGGAGAACACACAGCCCTTTTCAAAAGGTCTGGCTCTGACAGGGGGACCCTGACCCTGTGAGGGGAGCTGAAACTCTCCCTGCCAAATTAGCAACTGCACCACCACAGGAACAGTCATGGGGACGTTTGACATTGGTGCTGTCCTCAGACGCACAGGAGCAACATCTCAGAGCTGCAAAGGAGGCAACCCAGACTTCACCCAGCATCACAGTGATGAATGCATCCCTCCGGTCAATGACCCCAAGGTCACACGAACAGAGTATAGTGAAGTAGAGCCACTGCACCATGCGACATGCTCCCAGCCCACTCAGACCCTCTGCAGCCTTATTACAGAGGTCTGCCATTCAAAAGCATTACCCGCGTGTCACAGACTGCAGGCCAAGCAATCTCACATGCCACACTGCAGAGTGACACCACATTTATTAAACTTCTCCACTGGGCACATAAGAGGACACGCACACACACTCCCTCTCTTCAATGCCAATGGCCAAGGAAATGGAATTGGGGGGAGGGGTGATATGAATCTGTTTTCGCATTTGAAAAACCAAAGAGTTCTGCCAAATCAGCGCAGCACGTCTCTGACAAACACTCTGTTTTTCACCCTCCTCCCAATGAGCCGTTACACTGAGTTAGTCAAACATAAGGCAGAACAGCTCACGGCTGCAGTCTTCTTCTGAAAACAGACTGCCGACCTCCAGACACACACACACACACACACACCCACCCACACACACACACACACACAGAGAAACACCATTGCAGCATCTGTTCTACTAACCATTACTGCTACAAGTCTCATTCTCACAACAGCCCGCATTTCCTTCCTACTAATTAACAATTCTCATAGACTCCTTGAGTCACAGAGTTTGAGGACTGTCTTTTTTGTAGATCAGTTTCAAATGATTACACGGCCTGCAATTGAGAGGATGTTCTCGGCAGAACAAAAACAAATGATTTCCAGCTGTGATGACCTAACATGCAGTGTACTTCATGATAACGTGTGTCTTTAGCATCAGAGCATTGGACTTCCAGTGAATCCCTATCAGATAGTACACCCAAAAATGAAAGGTTTGTTATCATTTCCTCACCCTCGTGTCGTTTCCAAAACTGTATGACTCTTTCTTCCGTGGAACACAAAATAAGATATTTAGAAATATGTTGGCAATAAAATGGAAGATTTTACAAAGAACTGTTTTTTGTTTATACAACGAAAGTCAATTCGATCCAATTTTGTTTTTGGACTACATTGACTTTCATTGTATAAACAAAAACAGTTCAAAATATCTTCCACATAAGAAAGACAGAGTTTTGGACAAATGACAAAATTTTCATTTTTAGCTGATCTATAATCAGTTTTAAGCTTAAAGCCCTGATTTAGTAATGTAACAACTATCTGACTAAGCAGTCTGATGTATACTATGAATTCTCTGTAAATTCTGCCGCATTGTCCTGTTCTTTGTTATCTTTGCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312084 lncRNA upstream 30103 5117742 ~ 5117956 (+) True G275065
TU312024 lncRNA upstream 51078 5094112 ~ 5096981 (+) True G275022
TU312036 lncRNA upstream 57394 5086034 ~ 5090665 (+) True CI01000069_05086587_05092363
TU312054 lncRNA upstream 108144 5039622 ~ 5039915 (+) True G275048
TU312053 lncRNA upstream 108592 5039049 ~ 5039467 (+) True G275047
TU312106 lncRNA downstream 6478 5171866 ~ 5172982 (+) False G275085
TU312105 lncRNA downstream 6913 5172301 ~ 5173310 (+) True G275085
TU312107 lncRNA downstream 9094 5174482 ~ 5174981 (+) True G275086
TU312108 lncRNA downstream 9730 5175118 ~ 5175383 (+) True G275087
TU312041 lncRNA downstream 19343 5184731 ~ 5185209 (+) True G275035
CI01000069_05097987_05099733.mRNA mRNA upstream 48218 5097987 ~ 5099841 (+) True CI01000069_05097987_05099733
CI01000069_05086587_05092363.mRNA mRNA upstream 55487 5086284 ~ 5092572 (+) False CI01000069_05086587_05092363
CI01000069_05077178_05084933.mRNA mRNA upstream 62597 5077178 ~ 5085462 (+) True CI01000069_05077178_05084933
CI01000069_05064327_05071992.mRNA mRNA upstream 76027 5064116 ~ 5072032 (+) True CI01000069_05064327_05071992
CI01000069_05046565_05048523.mRNA mRNA upstream 98651 5045967 ~ 5049408 (+) False CI01000069_05046565_05048523
TU312063 other upstream 99069 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523
TU311947 other upstream 221372 4924467 ~ 4926687 (+) True G274953
TU311605 other upstream 589579 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311582 other upstream 1014681 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 1344558 3800023 ~ 3803501 (+) True G274603

Expression Profile