RNA id: TU310086


Basic Information

Item Value
RNA id TU310086
length 344
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G273253
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 52872 ~ 53215 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCATGTGCAGGTTGTCAGCGACCTCCCAGAACATATCATTCTGCTTGCTTTTTATATGTACTTAATGACTTTAATGATTAAGTAATAAACATATACAATACATATTCTCGCTAGTGCAAATTAGGCATGATTTGAAGGGAGAAACAGCAAAATTGAGAAGAAAAGCACAAGGGGCTTCTGTATCATTGCAACAGTCGGTAGAAGGTAGTGGAGGACACGTGCTGATGTTTGGCCAGTATTCATGTTTTCACACATGTCAGTGTTTAACAAAGGCTTACAGTTGGTATATATATTGTGACAGTAATGCACACACAACAAATGTACACACTCTGTTGATTCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310084 lncRNA upstream 9517 43087 ~ 43355 (+) True G273251
TU310085 lncRNA upstream 10687 41589 ~ 42185 (+) True G273252
TU310063 lncRNA upstream 13214 38589 ~ 39658 (+) True G273231
TU310087 lncRNA downstream 78 53293 ~ 53498 (+) True G273254
TU310088 lncRNA downstream 526 53741 ~ 53948 (+) True G273255
TU310089 lncRNA downstream 1128 54343 ~ 54546 (+) True G273256
TU310090 lncRNA downstream 1364 54579 ~ 54957 (+) True G273257
TU310098 lncRNA downstream 75879 129094 ~ 129314 (+) True G273265
CI01000069_00016660_00026781.mRNA mRNA upstream 26038 16315 ~ 26834 (+) True CI01000069_00016660_00026781
CI01000069_00066477_00068981.mRNA mRNA downstream 12845 66060 ~ 69349 (+) True CI01000069_00066477_00068981
CI01000069_00075784_00090901.mRNA mRNA downstream 22179 75394 ~ 91096 (+) True CI01000069_00075784_00090901
CI01000069_00091982_00141515.mRNA mRNA downstream 38459 91674 ~ 142316 (+) True CI01000069_00091982_00141515
CI01000069_00147622_00154047.mRNA mRNA downstream 94292 147507 ~ 154068 (+) True CI01000069_00147622_00154047
CI01000069_00246608_00247385.mRNA mRNA downstream 193296 246511 ~ 248179 (+) True CI01000069_00246608_00247385
TU310194 other downstream 424512 477727 ~ 479081 (+) True G273359
TU311015 other downstream 1980185 2112843 ~ 2172193 (+) True G274124
TU311181 other downstream 2619409 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 2839631 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 3559502 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756

Expression Profile