RNA id: TU310089


Basic Information

Item Value
RNA id TU310089
length 204
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G273256
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 54343 ~ 54546 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCACACCAAACTCGCTCATCCATGTCTTTATGGACCTTGCTTTTATGCACTGGTGCGCAGTCATGTTGGAACAGGAAGGGACCATCCCCAAACTATTCCCACAAAGTTGGGAGCATGAAATTATCCAAAATGCCTTGGTATGCTGAAGCATTAAGAGTTCCTTTCACTGGAACTAAGGGGCCAAGCCCAACCCCTGAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310088 lncRNA upstream 395 53741 ~ 53948 (+) True G273255
TU310087 lncRNA upstream 845 53293 ~ 53498 (+) True G273254
TU310086 lncRNA upstream 1128 52872 ~ 53215 (+) True G273253
TU310084 lncRNA upstream 10988 43087 ~ 43355 (+) True G273251
TU310085 lncRNA upstream 12158 41589 ~ 42185 (+) True G273252
TU310090 lncRNA downstream 33 54579 ~ 54957 (+) True G273257
TU310098 lncRNA downstream 74548 129094 ~ 129314 (+) True G273265
TU310111 lncRNA downstream 116356 170902 ~ 171320 (+) True G273278
TU310114 lncRNA downstream 118766 173312 ~ 173529 (+) True G273281
TU310115 lncRNA downstream 119165 173711 ~ 174053 (+) True G273282
CI01000069_00016660_00026781.mRNA mRNA upstream 27509 16315 ~ 26834 (+) True CI01000069_00016660_00026781
CI01000069_00066477_00068981.mRNA mRNA downstream 11514 66060 ~ 69349 (+) True CI01000069_00066477_00068981
CI01000069_00075784_00090901.mRNA mRNA downstream 20848 75394 ~ 91096 (+) True CI01000069_00075784_00090901
CI01000069_00091982_00141515.mRNA mRNA downstream 37128 91674 ~ 142316 (+) True CI01000069_00091982_00141515
CI01000069_00147622_00154047.mRNA mRNA downstream 92961 147507 ~ 154068 (+) True CI01000069_00147622_00154047
CI01000069_00246608_00247385.mRNA mRNA downstream 191965 246511 ~ 248179 (+) True CI01000069_00246608_00247385
TU310194 other downstream 423181 477727 ~ 479081 (+) True G273359
TU311015 other downstream 1978854 2112843 ~ 2172193 (+) True G274124
TU311181 other downstream 2618078 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 2838300 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 3558171 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756

Expression Profile