RNA id: TU310117



Basic Information


Item Value
RNA id TU310117
length 230
lncRNA type read_through
GC content 0.36
exon number 2
gene id G273284
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 175998 ~ 266154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTATTACTCACCCTCATGTCGTTCCACACCCATAAGACCTTCGTTAGTCTTCGGAACACAAATTAAGATATTTTTGTTGAAATCCGATGGCTCAGTGAGGCCAGCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATCAGTTCACGTGAGTACAGTGGTTCAATATTAATATTATAAAGTGACGAGAATATTTTTGGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU310115 lncRNA upstream 1945 173711 ~ 174053 (+) True G273282
TU310114 lncRNA upstream 2469 173312 ~ 173529 (+) True G273281
TU310111 lncRNA upstream 4678 170902 ~ 171320 (+) True G273278
TU310098 lncRNA upstream 46684 129094 ~ 129314 (+) True G273265
TU310090 lncRNA upstream 121041 54579 ~ 54957 (+) True G273257
TU310166 lncRNA downstream 26031 292185 ~ 292397 (+) True G273333
TU310171 lncRNA downstream 65884 332038 ~ 332312 (+) True G273338
TU310235 lncRNA downstream 192643 458797 ~ 460096 (+) True G273400
TU310236 lncRNA downstream 216660 482814 ~ 483227 (+) True G273401
TU310242 lncRNA downstream 237492 503646 ~ 504146 (+) True G273407
CI01000069_00147622_00154047.mRNA mRNA upstream 21930 147507 ~ 154068 (+) True CI01000069_00147622_00154047
CI01000069_00091982_00141515.mRNA mRNA upstream 33682 91674 ~ 142316 (+) True CI01000069_00091982_00141515
CI01000069_00075784_00090901.mRNA mRNA upstream 84902 75394 ~ 91096 (+) True CI01000069_00075784_00090901
CI01000069_00066477_00068981.mRNA mRNA upstream 106649 66060 ~ 69349 (+) True CI01000069_00066477_00068981
CI01000069_00016660_00026781.mRNA mRNA upstream 149164 16315 ~ 26834 (+) True CI01000069_00016660_00026781
CI01000069_00357901_00365747.mRNA mRNA downstream 91747 357901 ~ 366519 (+) True CI01000069_00357901_00365747
CI01000069_00403871_00404476.mRNA mRNA downstream 137452 403606 ~ 404493 (+) True CI01000069_00403871_00404476
CI01000069_00575065_00578555.mRNA mRNA downstream 308911 575065 ~ 578643 (+) True CI01000069_00575065_00578555
CI01000069_00596413_00741443.mRNA mRNA downstream 330259 596413 ~ 741443 (+) True CI01000069_00596413_00741443
CI01000069_00743257_00745220.mRNA mRNA downstream 477028 743182 ~ 746071 (+) True CI01000069_00743257_00745220
TU310194 other downstream 211573 477727 ~ 479081 (+) True G273359
TU311015 other downstream 1767246 2112843 ~ 2172193 (+) True G274124
TU311181 other downstream 2406470 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 2626692 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 3346563 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756

Expression Profile