RNA id: TU310171



Basic Information


Item Value
RNA id TU310171
length 275
lncRNA type intronic
GC content 0.48
exon number 1
gene id G273338
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 332038 ~ 332312 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTCTAAGGGTGCTTTCACATTAGCACTTTTAGTGCGCACCCGGGTTCGATTGACGTCAGAATTCGGTACGTTTGGATGATGTGAACACTGTCTTCTGAACTCGGGTGCGCACCCGCGAACCGTACCCGAGTCCGCTTAAAAAGGGTGGTCTGGGGTGCGGTTCAAGTGAACTCCGGTACGGTTCGCTTCTGATATGAATGCAAACGTACCAAATTGCGGAAGTGAACCGCTATTAATGCTGTATTATTTGATAAAAATGTGTGTTTGTGTGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU310166 lncRNA upstream 39641 292185 ~ 292397 (+) True G273333
TU310117 lncRNA upstream 65884 175998 ~ 266154 (+) True G273284
TU310115 lncRNA upstream 157985 173711 ~ 174053 (+) True G273282
TU310114 lncRNA upstream 158509 173312 ~ 173529 (+) True G273281
TU310111 lncRNA upstream 160718 170902 ~ 171320 (+) True G273278
TU310235 lncRNA downstream 126485 458797 ~ 460096 (+) True G273400
TU310236 lncRNA downstream 150502 482814 ~ 483227 (+) True G273401
TU310242 lncRNA downstream 171334 503646 ~ 504146 (+) True G273407
TU310247 lncRNA downstream 172553 504865 ~ 505120 (+) True G273408
TU310295 lncRNA downstream 424693 757005 ~ 757242 (+) True G273456
CI01000069_00246608_00247385.mRNA mRNA upstream 83859 246511 ~ 248179 (+) True CI01000069_00246608_00247385
CI01000069_00147622_00154047.mRNA mRNA upstream 177970 147507 ~ 154068 (+) True CI01000069_00147622_00154047
CI01000069_00091982_00141515.mRNA mRNA upstream 189722 91674 ~ 142316 (+) True CI01000069_00091982_00141515
CI01000069_00075784_00090901.mRNA mRNA upstream 240942 75394 ~ 91096 (+) True CI01000069_00075784_00090901
CI01000069_00066477_00068981.mRNA mRNA upstream 262689 66060 ~ 69349 (+) True CI01000069_00066477_00068981
CI01000069_00357901_00365747.mRNA mRNA downstream 25589 357901 ~ 366519 (+) True CI01000069_00357901_00365747
CI01000069_00403871_00404476.mRNA mRNA downstream 71294 403606 ~ 404493 (+) True CI01000069_00403871_00404476
CI01000069_00575065_00578555.mRNA mRNA downstream 242753 575065 ~ 578643 (+) True CI01000069_00575065_00578555
CI01000069_00596413_00741443.mRNA mRNA downstream 264101 596413 ~ 741443 (+) True CI01000069_00596413_00741443
CI01000069_00743257_00745220.mRNA mRNA downstream 410870 743182 ~ 746071 (+) True CI01000069_00743257_00745220
TU310194 other downstream 145415 477727 ~ 479081 (+) True G273359
TU311015 other downstream 1701088 2112843 ~ 2172193 (+) True G274124
TU311181 other downstream 2340312 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 2560534 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 3280405 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756

Expression Profile