RNA id: TU310242


Basic Information

Item Value
RNA id TU310242
length 501
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G273407
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 503646 ~ 504146 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCCTGTTTTTTGAGTGCTGAATCCAGGATGCTTTGGCTGATGTCCCAGTTTTGCCAGATAGGTAAAGCGAGTCTTCTCGCCAAATCTTCTCCATCATTACAGATGACTTCAAAAAAGAGCTGCTCTTCAGCTTCACCATCCTTATAGAGAGACTGGTAATACTGGGTAGAGAAGACGTTGGCCTCGTGCAGCTCTCTGAGAAAATCGTGTAGTAATCCAGGGCTAACCTGTAAAGCTTTTCTCACCTGTAACAACACATGCTCAAAGGGAACCATGACTGGACAGCAGCTGACAGATACTCTCATTTCAATGCTTTATCTCCTCCTTGATATGCTAATGCGAGATTATCTGCGTTTTTGTTCCTGGATTAAAACAAAACAAAACAAAACAAAACAAAAAAACACCCTCTGGTAAAAACCTCAGCAGATTCCATTTGTCTGCTTCGTACTGCAGTGTTTGAGGACAACCAGTTTTACCCAGGTCAGGTGAGGACAGTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310236 lncRNA upstream 20419 482814 ~ 483227 (+) True G273401
TU310235 lncRNA upstream 43550 458797 ~ 460096 (+) True G273400
TU310171 lncRNA upstream 171334 332038 ~ 332312 (+) True G273338
TU310166 lncRNA upstream 211249 292185 ~ 292397 (+) True G273333
TU310117 lncRNA upstream 237492 175998 ~ 266154 (+) True G273284
TU310247 lncRNA downstream 719 504865 ~ 505120 (+) True G273408
TU310295 lncRNA downstream 252859 757005 ~ 757242 (+) True G273456
TU310298 lncRNA downstream 257423 761569 ~ 761771 (+) True G273459
TU310631 lncRNA downstream 418302 922448 ~ 924406 (+) True G273761
TU310676 lncRNA downstream 455664 959810 ~ 960962 (+) False CI01000069_00962392_00964350
CI01000069_00403871_00404476.mRNA mRNA upstream 99153 403606 ~ 404493 (+) True CI01000069_00403871_00404476
CI01000069_00357901_00365747.mRNA mRNA upstream 137127 357901 ~ 366519 (+) True CI01000069_00357901_00365747
CI01000069_00246608_00247385.mRNA mRNA upstream 255467 246511 ~ 248179 (+) True CI01000069_00246608_00247385
CI01000069_00147622_00154047.mRNA mRNA upstream 349578 147507 ~ 154068 (+) True CI01000069_00147622_00154047
CI01000069_00091982_00141515.mRNA mRNA upstream 361330 91674 ~ 142316 (+) True CI01000069_00091982_00141515
CI01000069_00575065_00578555.mRNA mRNA downstream 70919 575065 ~ 578643 (+) True CI01000069_00575065_00578555
CI01000069_00596413_00741443.mRNA mRNA downstream 92267 596413 ~ 741443 (+) True CI01000069_00596413_00741443
CI01000069_00743257_00745220.mRNA mRNA downstream 239036 743182 ~ 746071 (+) True CI01000069_00743257_00745220
CI01000069_00910238_00919183.mRNA mRNA downstream 405740 909886 ~ 919703 (+) True CI01000069_00910238_00919183
CI01000069_00925578_00927804.mRNA mRNA downstream 421173 925319 ~ 927819 (+) True CI01000069_00925578_00927804
TU310194 other upstream 24565 477727 ~ 479081 (+) True G273359
TU311015 other downstream 1529254 2112843 ~ 2172193 (+) True G274124
TU311181 other downstream 2168478 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 2388700 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 3108571 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 3295877 3800023 ~ 3803501 (+) True G274603

Expression Profile