RNA id: TU310631



Basic Information


Item Value
RNA id TU310631
length 1817
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G273761
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 922448 ~ 924406 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATTCTGAAATGGAGACCACAATGACAGTCCTTGCTGATGACAGACTCGATCTGCAAGACAGAAATAAAATCAGGGGCGCTCATGTGACCTTAAAGACAACAGAGATTACTAAAATAAATTAGTTCCAGAAAAGTGTTCAGACAGGATTTCTGTTGTTAACCTTTACACCATAAGACTGGGGAAATCATGGAAAATATATTTTCTAACTACGTAGATAATACATGTCAAATTCAGCTGGTTTTGCAAAGGATTAAACCATGTTCATACTATTTCCAAGGAGACATTAAAGTGAGTTTTAAATCACTAAAATAGCTAATTTATTTCTAAAATAAGATACGTTTTCCATTTTAAACATTTGTACAAGCAAAAGCTGTAATTAAAAGGATACTTCACAAAAAAATATTAGGAATTGACAGTCTATGTCACCATTCACTTCCACTGTATGAAAAAGGACAGAAATGCAATGAAAGTGAATAGTGACTGAGGTACCTAGCATTCTGGCTAACATCTGCTTTTGTGTTTTTAAAGAAATTCATACAGGTTTTGAAAAACATGAGTTAGTAAAAAACTACAGAATATTTATTAATGAATTAAAGAGTGTATGTTTTTTCTAGAGGGGAAAAAGAAAAGGTTCTAACATTTACACACTTTTTTTATATACAAGTATTAATGTATTATTTAAAAAAAAAAAAATTTAAAAAAAAAAAAAGCGCCAAATAAAGCAAAGGATGCACTTATCAGTACAACAGACTATGAAAGAACAATGAAAGCGACTGGTGACCGTGCCTGTCAGTACCTAACGTTTCTTTTTGTGTTTCACATAAAGCAAGAACTTCATAGAGGTTTGGAACAACATAAGAGCGGGTAAATAATGACAGTTTTCATTTTGGGGTGAACTAACCATCCCTTTAAGAGCGAGTTCAGTAACCCAGACAATGACTGTGTGTCAAATCCTAGTGAGCACCAACCTGGGCAGGATACTATGGCAATACAAGTGTGTTCTTCTAACGTGCCTATGTTGCACAAAGGTAGCTGAGTGCACTAGGTTTTGAAACACAGCCACAATAGGACACAAGCTAGCTCACTAACCGGCAGGGCTTTGTCAAAACGTGTGATAAAGCGTAAATGTGTTACATAAAGATCTTAAAATCAGTTATTCCTATACAGATAGTTTAGCCGATAAGAACTAAAAACTCGTATTAAAGGGCGAGCTAGCCGGCTTTCAGGCTATCCGGTTAGCAATAGCAAGGCCAATATAATAACAACGAACAAACTGTCAAACACAGCCAGACCGGCGCGGCTAAAGCTAATTATCATTCACACGGACAAAGCATAAAACGCTGCTTTTGGTGACTTTAGTGGCCAAATGATACCGACCTTTATAAAGTTGCGCCACCGCCGTAGCGGAATTCTGGAAGAGATGCCACAGTTTCTCTTGGTTCTGGTCCACCGCCTCCTCGTTCGGTTCTTCCCTTTCGGCCTCGGCCAGGCATTGACGCTCCCATTTGGAGAACCAGTGCTCGGGTCCGTGTTCGTGGATCTCCGCTTCGCTCTCCTCCTTCTTCTCCTCCATGATGAATACTGAGAAACTTCGGTGAACTTCTGCTCGTTTTTTTGAGTAATTTCTTGATCTTGTGGGTTAATTCGCGTTTATGAAATCACACAACATCTGATAAGTGTCGGTTAATTTCCTTATTTCTGGATTTACAGGTCTGAATTAAAACGAAATGAAGTGAAATGTTTTGTCTTTTGTGACGCCGAAATTTAATTACCCAGGACTGTAGCTGTCTACCCCGGTTAGAGGACTGCTTTTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU310298 lncRNA upstream 160677 761569 ~ 761771 (+) True G273459
TU310295 lncRNA upstream 165206 757005 ~ 757242 (+) True G273456
TU310247 lncRNA upstream 417328 504865 ~ 505120 (+) True G273408
TU310242 lncRNA upstream 418302 503646 ~ 504146 (+) True G273407
TU310236 lncRNA upstream 439221 482814 ~ 483227 (+) True G273401
TU310676 lncRNA downstream 35404 959810 ~ 960962 (+) False CI01000069_00962392_00964350
TU310674 lncRNA downstream 35675 960081 ~ 960313 (+) True G273803
TU310675 lncRNA downstream 35675 960081 ~ 960962 (+) True CI01000069_00962392_00964350
TU310640 lncRNA downstream 98764 1023170 ~ 1023898 (+) True G273770
TU310700 lncRNA downstream 160326 1084732 ~ 1084941 (+) True G273827
CI01000069_00910238_00919183.mRNA mRNA upstream 2745 909886 ~ 919703 (+) True CI01000069_00910238_00919183
CI01000069_00743257_00745220.mRNA mRNA upstream 176377 743182 ~ 746071 (+) True CI01000069_00743257_00745220
CI01000069_00596413_00741443.mRNA mRNA upstream 181005 596413 ~ 741443 (+) True CI01000069_00596413_00741443
CI01000069_00575065_00578555.mRNA mRNA upstream 343805 575065 ~ 578643 (+) True CI01000069_00575065_00578555
CI01000069_00403871_00404476.mRNA mRNA upstream 517955 403606 ~ 404493 (+) True CI01000069_00403871_00404476
CI01000069_00925578_00927804.mRNA mRNA downstream 913 925319 ~ 927819 (+) True CI01000069_00925578_00927804
CI01000069_00932460_00950854.mRNA mRNA downstream 7904 932310 ~ 951447 (+) True CI01000069_00932460_00950854
CI01000069_00962392_00964350.mRNA mRNA downstream 36406 960812 ~ 964499 (+) False CI01000069_00962392_00964350
CI01000069_00966300_00979227.mRNA mRNA downstream 41894 966300 ~ 980520 (+) True CI01000069_00966300_00979227
CI01000069_00994148_01017851.mRNA mRNA downstream 69046 993452 ~ 1018734 (+) True CI01000069_00994148_01017851
TU310194 other upstream 443367 477727 ~ 479081 (+) True G273359
TU311015 other downstream 1108994 2112843 ~ 2172193 (+) True G274124
TU311181 other downstream 1748218 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 1968440 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 2688311 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 2875617 3800023 ~ 3803501 (+) True G274603

Expression Profile