Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU310640 |
| length | 642 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 2 |
| gene id | G273770 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 1023170 ~ 1023898 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU310676 | lncRNA | upstream | 62208 | 959810 ~ 960962 (+) | False | CI01000069_00962392_00964350 |
| TU310675 | lncRNA | upstream | 62208 | 960081 ~ 960962 (+) | True | CI01000069_00962392_00964350 |
| TU310674 | lncRNA | upstream | 62857 | 960081 ~ 960313 (+) | True | G273803 |
| TU310631 | lncRNA | upstream | 98764 | 922448 ~ 924406 (+) | True | G273761 |
| TU310298 | lncRNA | upstream | 261399 | 761569 ~ 761771 (+) | True | G273459 |
| TU310700 | lncRNA | downstream | 60834 | 1084732 ~ 1084941 (+) | True | G273827 |
| TU310727 | lncRNA | downstream | 95478 | 1119376 ~ 1120080 (+) | True | G273850 |
| TU310725 | lncRNA | downstream | 124566 | 1148464 ~ 1178111 (+) | True | G273848 |
| TU310832 | lncRNA | downstream | 322479 | 1346377 ~ 1346723 (+) | True | G273955 |
| TU310882 | lncRNA | downstream | 390106 | 1414004 ~ 1414380 (+) | True | G274005 |
| CI01000069_01020120_01022182.mRNA | mRNA | upstream | 879 | 1020120 ~ 1022291 (+) | True | CI01000069_01020120_01022182 |
| CI01000069_00994148_01017851.mRNA | mRNA | upstream | 4436 | 993452 ~ 1018734 (+) | True | CI01000069_00994148_01017851 |
| CI01000069_00966300_00979227.mRNA | mRNA | upstream | 42650 | 966300 ~ 980520 (+) | True | CI01000069_00966300_00979227 |
| CI01000069_00962392_00964350.mRNA | mRNA | upstream | 58671 | 960812 ~ 964499 (+) | False | CI01000069_00962392_00964350 |
| CI01000069_00932460_00950854.mRNA | mRNA | upstream | 71723 | 932310 ~ 951447 (+) | True | CI01000069_00932460_00950854 |
| CI01000069_01027083_01031960.mRNA | mRNA | downstream | 3185 | 1027083 ~ 1032781 (+) | True | CI01000069_01027083_01031960 |
| CI01000069_01047561_01050241.mRNA | mRNA | downstream | 23597 | 1047495 ~ 1050340 (+) | True | CI01000069_01047561_01050241 |
| CI01000069_01099046_01114142.mRNA | mRNA | downstream | 75148 | 1099046 ~ 1114404 (+) | True | CI01000069_01099046_01114142 |
| CI01000069_01340581_01345512.mRNA | mRNA | downstream | 316270 | 1340168 ~ 1345955 (+) | True | CI01000069_01340581_01345512 |
| CI01000069_01454390_01514188.mRNA | mRNA | downstream | 430492 | 1454390 ~ 1514188 (+) | True | CI01000069_01454390_01514188 |
| TU310194 | other | upstream | 544089 | 477727 ~ 479081 (+) | True | G273359 |
| TU311015 | other | downstream | 1009502 | 2112843 ~ 2172193 (+) | True | G274124 |
| TU311181 | other | downstream | 1648726 | 2672624 ~ 2681158 (+) | True | G274270 |
| TU311230 | other | downstream | 1868948 | 2892846 ~ 2892971 (+) | True | G274314 |
| TU311499 | other | downstream | 2588819 | 3636100 ~ 3638430 (+) | True | CI01000069_03636156_03639756 |
| TU311564 | other | downstream | 2776125 | 3800023 ~ 3803501 (+) | True | G274603 |
