RNA id: TU310700


Basic Information

Item Value
RNA id TU310700
length 210
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G273827
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1084732 ~ 1084941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAAAAAAAAAAGAAACAACGAATAATATCCCCACTTCTTTCGATCATTTTGTCATAAATGATTCGTTTAGACTCGAATGGGGCATGTTCGTTCAGTAGGTACAACCAATTAAATGCTTATTAACAGCCCACACTTGGTCTATTGCTATAGTCAGTCTCAGCAGGGTGCATGAACGATTCATTTACTTAAAAGATTCGTTCAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310640 lncRNA upstream 60834 1023170 ~ 1023898 (+) True G273770
TU310676 lncRNA upstream 123770 959810 ~ 960962 (+) False CI01000069_00962392_00964350
TU310675 lncRNA upstream 123770 960081 ~ 960962 (+) True CI01000069_00962392_00964350
TU310674 lncRNA upstream 124419 960081 ~ 960313 (+) True G273803
TU310631 lncRNA upstream 160326 922448 ~ 924406 (+) True G273761
TU310727 lncRNA downstream 34435 1119376 ~ 1120080 (+) True G273850
TU310725 lncRNA downstream 63523 1148464 ~ 1178111 (+) True G273848
TU310832 lncRNA downstream 261436 1346377 ~ 1346723 (+) True G273955
TU310882 lncRNA downstream 329063 1414004 ~ 1414380 (+) True G274005
TU310636 lncRNA downstream 432717 1517658 ~ 1541835 (+) True G273766
CI01000069_01047561_01050241.mRNA mRNA upstream 34392 1047495 ~ 1050340 (+) True CI01000069_01047561_01050241
CI01000069_01027083_01031960.mRNA mRNA upstream 51951 1027083 ~ 1032781 (+) True CI01000069_01027083_01031960
CI01000069_01020120_01022182.mRNA mRNA upstream 62441 1020120 ~ 1022291 (+) True CI01000069_01020120_01022182
CI01000069_00994148_01017851.mRNA mRNA upstream 65998 993452 ~ 1018734 (+) True CI01000069_00994148_01017851
CI01000069_00966300_00979227.mRNA mRNA upstream 104212 966300 ~ 980520 (+) True CI01000069_00966300_00979227
CI01000069_01099046_01114142.mRNA mRNA downstream 14105 1099046 ~ 1114404 (+) True CI01000069_01099046_01114142
CI01000069_01340581_01345512.mRNA mRNA downstream 255227 1340168 ~ 1345955 (+) True CI01000069_01340581_01345512
CI01000069_01454390_01514188.mRNA mRNA downstream 369449 1454390 ~ 1514188 (+) True CI01000069_01454390_01514188
CI01000069_01634504_01643721.mRNA mRNA downstream 549243 1634184 ~ 1644078 (+) True CI01000069_01634504_01643721
CI01000069_01649266_01653494.mRNA mRNA downstream 564325 1649266 ~ 1653697 (+) True CI01000069_01649266_01653494
TU310194 other upstream 605651 477727 ~ 479081 (+) True G273359
TU311015 other downstream 948459 2112843 ~ 2172193 (+) True G274124
TU311181 other downstream 1587683 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 1807905 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 2527776 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 2715082 3800023 ~ 3803501 (+) True G274603

Expression Profile