RNA id: TU312216


Basic Information

Item Value
RNA id TU312216
length 3698
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G275179
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1120362 ~ 1124297 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCTTCAGCCGTGACTTATTCACGATACAGCACAGCCTCGAGTACCTTATTGCTTACCTATAAAGCTTTAATAATAGTCATTTCAATTCCATGAGAATATCAAAGTCTCACCGCAGCTATAACAATAACAAAACAGGAGAACAAAACAGGGAGCTGATGAATGATTAAAACAGCCAATCAAAATCCAAAGAGGTTGAGCATTTAAAGCGGCAGATTTAACTGCAGCATGCACTTATAATGAACAGAACATTTATCGTACATTGAGATGAACACTAATATAGTTCTTGTTCTTGGTAAGAACAGGCCTGAAGACATCTCGAGTGTCTCTAGTGGATCCCGACCACTGTTTTTAAATGTTATACAGGCATAGATTTTAAATGTAGCTATATGTGTTAATTAAAGAGACAGCAGGAAAAGGCCATACGTCACGACGATCATAATTCCGAAAACTGTCATCCTAATGCAGTTTACAATGCGTCTCTGAAGCCATTCGTCATGAACGCGACCGGCACGAGTAACTGTCATATCTAAGATTTGTGCACTGCACCTAGCAACCTCTTGCCTGTGTGAGCTTTATCAGACACTCGCACTTAAATTGTCACCAGTCGGCTGGATTTCATGCAAACTTTCTCTGCGCTCGTGACACGGGCTGATACAGGAGGTGCACATTATGAATGAATGACTGAGTGGGCTGGAGGGAAGCAGGAGGCAGCAGGGCAGAAGCTAATCGCCTCTCCATCATATCTGTTCTGCTCCACTTTCTCCCGCAGAGTCTCTGATAATAGACATTTCATCAGAGATTAGGCACCAGGCCTCTAAACACTGCTGCAGGGGAACCCTTGCGTCGCTGCCAGTGCTACGCCGCTGAGGGAAGCTCTTCGCCCTCCTCCTCTTCCTCCCGCAGCCCTGTCTTTTTCCGGAGTTTCCAAATGACTCATCAGACCCGTAATGCAAATGAGAGCTATGTTGAGATGCTTGGGTCTTGTTTTCATTTGTCTGGAGCCCCGTGGAATTCACCAACGCCGTGATGCGACCTGCCGTTTTCAATTTCAAAAGGCCAAAGATTTCGTGTCTGCTAGGGCTCTTGGAATGGTGTTTTTTTGTCAGCATTCCTGAGCTTCTTGCGCTGGAGATGACATCACCACTCTGGAGAAAGAGCTGACGTGAGTGTGATGTATGCAAACATTAATGCGCATCACACGGTGTGAAGACATCAAACAGTTCAACTGCTGCCGAGGCACACTGTATCTTTCAGCTTTCTTCTGCCATTTGAATGCACTCAACAACAACAAAAAAAAGATAATCCTAGTTCTGGCTTGTGATTGGTTAACATTGTGTTCTAGCCATGATAAAATACAAATTCCTGTGCAGTGTTAAAGGATTAGTTCACTTTAAAACGGAAATTAGCCCAAGCTTTACTCACCCTCAGGCCATCCTAGGTGTATATGACTTTCTTCTTTCTGATGAACACAATCGGAGTTATATTAATAAATATCCTAACGCATCCGAGCTTAATAATGGCAATGAGCGATACCAATAAGTGTGAAGCTCAAGAAAGTGCATCCATCCAAAGCAAAACGTACTCCACACGGCTCCAGGGGGTTAATAAAGGCCTTCTGAAGCAAAGCAATGCGTTATGGTAAGAAAAATATCCATATTTAACAAGTTATGAAGTAAAATATCTAGCTTCCGCCAGACCGGCTTTTTAAAAAATACTTTATTAAAAGTATGGTAATTTATTTTAGATTTTAAATACATCCACTTAGTAAGTATAATAAAATATCTGTTTTTATATATTGAAATTAATATAATTTGAATGACTGTTTTCGTTTAAAAATAAATTAGATATTAGTTAATTTAATGTGTTAACTGTTATGTAGCCTATGGTTATGATAATTGCATTGGAATGATCGCATCTCACAATATAGCAGGAGTCTTATTGTTTTTGTAGAGCGCCTGAGCTATGATGAAGAAATATCTATTCTCTTTGCATCAAATGATTTAACGTATCCATATTGGGAAACAGAAAATGGCATTAGTTCAAAACCATAATATCGGTTATTAAATTGGCAAATGCCTGTGGTGGCGGAAACAAGTTTATCTTTATAAAGCTGAAGTGATAAAGGATTAGCTGAAACACCAAAGAGAGTCGTGACTCGTGTCTTCTCCAAAAAGAGCCTTTAGACATTTTGAACATCTGCAGTTTAAAGCTGCACTGGGAAAGGCATATGGATATAATTGCATTAGCAAAAAAAAATGGAGCCATGTTTTTATTTAAACTCTTTGTATGCTCAGTTTGCGATGTTAATAGTAGGCCAAGTGTGCACACATGGGAACTGATTTTACTGTAAACACAAGCATTACGAAGAATGACTCAGTATATACTACAGGGCCTCTGATTGTAAGAATGAACCTCCCTCTGAAGAACCATATTTTTAGTNNGTCCCTGTTGTGTGCGTGTAGAGATGCATATTTACATATCTACATTCCTTCTATGAACCATTGCCATTACAGGGAGGTTATGTAACAGTGCCTTAGGAGCTGATGGAAGTGATGTGGCTTCTAATATGTCAAGTAGCGTCAGCTGTTATTGATGGTGTTATTATATTAAAATTACATTAATGTTGCGATATTACATTAATGTCTAGCTGCCATTTTTAGTATTCTTGAAAAAAAGAAAAAGAAAATGTTATAATTGTGGACTTTATTCATCCAGACATGTAATTTTCATTGGAATTAAATCTATTAATTATAGATTCTGGCATTACTATGGTCCATTAACTAAAGGTATTTCATTTAAATACAAAATTTACTACTCACATTTATATATACAATCAAACCAAAATTTATTCAGGCACTTTGAACATTTCATTCATTACAGTTTATTCACTATAGTTTAAAAAAAAAAATGATAATAAAATATGACAAGATCTCAGAGTTAAACTGTGTCAGAAAAATCTTAATTATGTCAGATAACACTTAAGCAAAACATGGTCAGATCAAAGTGTCTGAATAATTTTTGGTTCCAAATTTTTATCAATTTTACTGGTAGTCCACTGTATGAAGACTTTTTGTGTATAATATGTCACAGTTTACTATTTTTTTGCTATCTTCACTTACATAAATGAACTATAGTGTCCTGTACCCACTAGTAAAAATATATCAAAAATGTGTGAATAATAATGTCTAAATCATACCCTTGGTAAATATGATCAAAGAAGGCTGTGAAAATAAATCTGCACTGTTAATCCTTTTGATCTTTTACTTTAAAAATTTTAAAAAATTGAACCATTCATTGGAGAATAAGAATTTAAAATGGGGGGAAAATCTCATTATGAAATAAATGTTTTTTCTCTAATACACATTGCTCACAATTAATCATACCCTTTTATTTAATACTTTTTTGCAACCTCCTTTTGCCAAGATAACAGCTCTGAGTCTTCTCCTATAATGCCTGATGAGTTTGGAGAACACCTGACAAGAGATCAGAGATCATTCCTTCAAACAGAATCCCTCCAGATCCTTCAGATTCCCAGCTCCATGTTGATGCATCTCGTCTTCAGTTCACCCCATTTCATTCAGTTTACCCCACTCATTTTCTATAGGATTCAGGTCAGGGGACTGGGTTGGCCATGGCAGAAGCATGGTTTTGTGCTCAGTGAACCATTTTTGTTTTGATTTTGATGTTTGTTTTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312213 lncRNA downstream 33971 1085650 ~ 1086391 (-) True CI01000069_01085974_01097576
TU312235 lncRNA downstream 88384 1027973 ~ 1031978 (-) True G275198
TU312204 lncRNA downstream 100916 1014838 ~ 1019446 (-) False G275169
TU312206 lncRNA downstream 100916 1015167 ~ 1019446 (-) True G275169
TU312212 lncRNA downstream 117588 999923 ~ 1002774 (-) True G275175
TU312221 lncRNA upstream 113690 1237987 ~ 1240609 (-) True G275184
TU312219 lncRNA upstream 149143 1273440 ~ 1306881 (-) True G275182
TU312228 lncRNA upstream 159194 1283491 ~ 1299129 (-) True G275191
TU312226 lncRNA upstream 219139 1343436 ~ 1349224 (-) True G275189
TU312225 lncRNA upstream 246759 1371056 ~ 1381154 (-) True G275188
CI01000069_01085974_01097576.mRNA mRNA downstream 22786 1085665 ~ 1097576 (-) False CI01000069_01085974_01097576
CI01000069_01052717_01076129.mRNA mRNA downstream 44233 1052208 ~ 1076129 (-) True CI01000069_01052717_01076129
CI01000069_01023405_01025613.mRNA mRNA downstream 94304 1023342 ~ 1026058 (-) True CI01000069_01023405_01025613
CI01000069_00983726_00984227.mRNA mRNA downstream 136048 983153 ~ 984314 (-) True CI01000069_00983726_00984227
CI01000069_00952894_00955774.mRNA mRNA downstream 164588 952384 ~ 955774 (-) False CI01000069_00952894_00955774
CI01000069_01141607_01144384.mRNA mRNA upstream 17173 1141470 ~ 1144821 (-) True CI01000069_01141607_01144384
CI01000069_01155772_01178120.mRNA mRNA upstream 31145 1155442 ~ 1178120 (-) True CI01000069_01155772_01178120
CI01000069_01410825_01412802.mRNA mRNA upstream 286290 1410587 ~ 1413155 (-) True CI01000069_01410825_01412802
CI01000069_01519314_01531186.mRNA mRNA upstream 394904 1519201 ~ 1531586 (-) True CI01000069_01519314_01531186
CI01000069_01571371_01593400.mRNA mRNA upstream 447074 1571371 ~ 1593400 (-) True CI01000069_01571371_01593400
TU312233 other downstream 164572 813235 ~ 954003 (-) True G275196
TU312215 other downstream 174558 926923 ~ 945804 (-) True G275178
TU310316 other downstream 1073148 46896 ~ 47214 (-) False G273476
TU310319 other downstream 1073193 46896 ~ 47169 (-) True G273476
TU310314 other downstream 1076990 41656 ~ 43372 (-) False CI01000069_00041648_00043198
TU312389 other upstream 521471 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312710 other upstream 1486878 2621752 ~ 2630247 (-) False G275624
TU312711 other upstream 1486878 2621752 ~ 2630316 (-) True G275624
TU312760 other upstream 1864729 2989026 ~ 2991817 (-) True G275668
TU312791 other upstream 1868207 2992504 ~ 3078168 (-) True G275699

Expression Profile