RNA id: TU312336


Basic Information

Item Value
RNA id TU312336
length 236
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G275286
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1453126 ~ 1453361 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTAAAAATAGACCAGCTGCATCAAAATCCACATGACATAGACTGTGAAGTAAAAATTGTGAAGATCTTCATGTCACCCCTATATCAACTTTAAAGGCATAATGACATTTGTTCTCAATTAAAAGCATGTGCTAAGGAAATGTTAGGTACAAGAAGATAGTGGAAACAGTCTCTTGTGGGGCTGAATGGTAAGTCTACACCTGGAGCATGTAAATTGTAGTGACACTGTATAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312334 lncRNA downstream 2404 1450410 ~ 1450722 (-) True G275284
TU312326 lncRNA downstream 32278 1420411 ~ 1420848 (-) True G275276
TU312232 lncRNA downstream 57943 1391823 ~ 1395183 (-) True G275195
TU312225 lncRNA downstream 71972 1371056 ~ 1381154 (-) True G275188
TU312226 lncRNA downstream 103902 1343436 ~ 1349224 (-) True G275189
TU312224 lncRNA upstream 1092 1454453 ~ 1455732 (-) True G275187
TU312338 lncRNA upstream 6423 1459784 ~ 1460061 (-) True G275288
TU312339 lncRNA upstream 9435 1462796 ~ 1463027 (-) True G275289
TU312340 lncRNA upstream 14558 1467919 ~ 1468137 (-) True G275290
TU312341 lncRNA upstream 16674 1470035 ~ 1470297 (-) True G275291
CI01000069_01410825_01412802.mRNA mRNA downstream 39971 1410587 ~ 1413155 (-) True CI01000069_01410825_01412802
CI01000069_01155772_01178120.mRNA mRNA downstream 275006 1155442 ~ 1178120 (-) True CI01000069_01155772_01178120
CI01000069_01141607_01144384.mRNA mRNA downstream 308305 1141470 ~ 1144821 (-) True CI01000069_01141607_01144384
CI01000069_01085974_01097576.mRNA mRNA downstream 355550 1085665 ~ 1097576 (-) False CI01000069_01085974_01097576
CI01000069_01052717_01076129.mRNA mRNA downstream 376997 1052208 ~ 1076129 (-) True CI01000069_01052717_01076129
CI01000069_01519314_01531186.mRNA mRNA upstream 65840 1519201 ~ 1531586 (-) True CI01000069_01519314_01531186
CI01000069_01571371_01593400.mRNA mRNA upstream 118010 1571371 ~ 1593400 (-) True CI01000069_01571371_01593400
CI01000069_01632361_01633951.mRNA mRNA upstream 178863 1632224 ~ 1633951 (-) True CI01000069_01632361_01633951
CI01000069_01645966_01647142.mRNA mRNA upstream 191161 1644522 ~ 1647142 (-) False CI01000069_01645966_01647142
CI01000069_01653730_01654507.mRNA mRNA upstream 200345 1653706 ~ 1654507 (-) False CI01000069_01653730_01654507
TU312233 other downstream 497336 813235 ~ 954003 (-) True G275196
TU312215 other downstream 507322 926923 ~ 945804 (-) True G275178
TU310316 other downstream 1405912 46896 ~ 47214 (-) False G273476
TU310319 other downstream 1405957 46896 ~ 47169 (-) True G273476
TU310314 other downstream 1409754 41656 ~ 43372 (-) False CI01000069_00041648_00043198
TU312389 other upstream 192407 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312710 other upstream 1157814 2621752 ~ 2630247 (-) False G275624
TU312711 other upstream 1157814 2621752 ~ 2630316 (-) True G275624
TU312760 other upstream 1535665 2989026 ~ 2991817 (-) True G275668
TU312791 other upstream 1539143 2992504 ~ 3078168 (-) True G275699

Expression Profile