RNA id: TU312339


Basic Information

Item Value
RNA id TU312339
length 232
lncRNA type intronic
GC content 0.34
exon number 1
gene id G275289
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1462796 ~ 1463027 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAATATTTTTATTCTGGTGTCACTGTTGTCCTGTGCATTGGGTTACCAGCACCAAGTCCAAGCCTATTAATTTCCACCCCCAATTTAATACAAAATTTAGCATTTTAATCAACAGTACATTTTTTGTTATCCTTTTACCATATGTCTTGGAGTATCGCAATAAGATCATATTCGTGAGTTCAGTATCATAATATGTATCAAATTGTGACATGAGGGTATCATTACACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312338 lncRNA downstream 2735 1459784 ~ 1460061 (-) True G275288
TU312224 lncRNA downstream 7064 1454453 ~ 1455732 (-) True G275187
TU312336 lncRNA downstream 9435 1453126 ~ 1453361 (-) True G275286
TU312334 lncRNA downstream 12074 1450410 ~ 1450722 (-) True G275284
TU312326 lncRNA downstream 41948 1420411 ~ 1420848 (-) True G275276
TU312340 lncRNA upstream 4892 1467919 ~ 1468137 (-) True G275290
TU312341 lncRNA upstream 7008 1470035 ~ 1470297 (-) True G275291
TU312342 lncRNA upstream 8713 1471740 ~ 1471941 (-) True G275292
TU312343 lncRNA upstream 9078 1472105 ~ 1472537 (-) True G275293
TU312344 lncRNA upstream 11972 1474999 ~ 1475222 (-) True G275294
CI01000069_01410825_01412802.mRNA mRNA downstream 49641 1410587 ~ 1413155 (-) True CI01000069_01410825_01412802
CI01000069_01155772_01178120.mRNA mRNA downstream 284676 1155442 ~ 1178120 (-) True CI01000069_01155772_01178120
CI01000069_01141607_01144384.mRNA mRNA downstream 317975 1141470 ~ 1144821 (-) True CI01000069_01141607_01144384
CI01000069_01085974_01097576.mRNA mRNA downstream 365220 1085665 ~ 1097576 (-) False CI01000069_01085974_01097576
CI01000069_01052717_01076129.mRNA mRNA downstream 386667 1052208 ~ 1076129 (-) True CI01000069_01052717_01076129
CI01000069_01519314_01531186.mRNA mRNA upstream 56174 1519201 ~ 1531586 (-) True CI01000069_01519314_01531186
CI01000069_01571371_01593400.mRNA mRNA upstream 108344 1571371 ~ 1593400 (-) True CI01000069_01571371_01593400
CI01000069_01632361_01633951.mRNA mRNA upstream 169197 1632224 ~ 1633951 (-) True CI01000069_01632361_01633951
CI01000069_01645966_01647142.mRNA mRNA upstream 181495 1644522 ~ 1647142 (-) False CI01000069_01645966_01647142
CI01000069_01653730_01654507.mRNA mRNA upstream 190679 1653706 ~ 1654507 (-) False CI01000069_01653730_01654507
TU312233 other downstream 507006 813235 ~ 954003 (-) True G275196
TU312215 other downstream 516992 926923 ~ 945804 (-) True G275178
TU310316 other downstream 1415582 46896 ~ 47214 (-) False G273476
TU310319 other downstream 1415627 46896 ~ 47169 (-) True G273476
TU310314 other downstream 1419424 41656 ~ 43372 (-) False CI01000069_00041648_00043198
TU312389 other upstream 182741 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312710 other upstream 1148148 2621752 ~ 2630247 (-) False G275624
TU312711 other upstream 1148148 2621752 ~ 2630316 (-) True G275624
TU312760 other upstream 1525999 2989026 ~ 2991817 (-) True G275668
TU312791 other upstream 1529477 2992504 ~ 3078168 (-) True G275699

Expression Profile