RNA id: TU311054



Basic Information


Item Value
RNA id TU311054
length 1252
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G274156
representative False

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2363135 ~ 2364601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTATTAAATGAAAGAAATAAAACACTGCCATAAAATAATTTGGATTTTATATTACATTAACAAAAATGCAGATTCATTGCACATTGCTGTATCTTAATATGTTTGGATTACAGGTCTGCGCTCGTCTCAGTCTGTAAGAAACCTCATATCAGAAAGCTTTGTTTTACTGACATAATCTGAACCACAGAAAAGAACCACATTATTCCATTGAGTCTAGAAAGATACCAACAAGTAAACAAGGCTATAAACTTTGAAACCAGGGCAGAGGTAACAATATTTAAGGGGAAAACCCTGACTACCACCAAACTAAACCACACATCCACTATTAATATGCCATTCTTTCGAAGGGAACATGCGAGCGCTCTATATTGATGCCAGTGTATTGGGGATTTGAGCATATTTGGTTGTGGATGAAGCAGAAAACACCATTGGTAATTTGGCCTGGTTATGTTATGCCAAGTTTCAGATTAGGATAGGTCAAGTAGGTTTGTATGTGTATGTGCAATGTATAATTAAAAGGCCATTTCTAGATAAGTTCAAATCAGGTAGAATTGTGTCTGTGTGTGTCTGTGTGTGGTGTTAGGAGGTGTGCTGAGGCAGATTCTGTGGTGGCTCAGCTGGCAGGTTATTCTTAACATCTCCATTCTGATCGGCTGGTACTTTTACCACTAAAAAACAAAACAGGCAATGTTTACTGTCCTAAAACATTTATCCCGAAAGGGTTAATAGAATCAATTTTTATAAAATTATATTAGGTTAACCAAAGGCTGAATCAATTTAATTCTTCTCACCTTGACTGTCTTCATTTGCTAGTTTCTGGATCTCCTGTTGAAACTGGAGCTCTCCATTAGGACCTGAGGGAGGCTGTCTATTCACTGCCTGTTGCTCCTTTTGTTTTTGTGACATCTCCATTACTGCCTGCTGATATTCTCGTTTCTGCACTTCTAGAGCTTTGCTTCTCTCTTTGAGAAGTTCCTGCTCCTGTCGTAATTTCTCCGCTCTTCTGCCAAGCTCCACCTCCTTATCCCGGAGTTCTGCCTCAAAGCGCTGCAGCTCCTCTTCTGTGTACACTGGCTTTGTATCATCCAGTGTCTTAAATGGAGATATAAAGAGTGTAGAAAGGTAATGAGTTAGAACAAAACACTTCCATGTAAAAACAGTATAATAAATCAAGACATACATCTAAATCTGGCTCTAACCTCCCACTCCTTTTGGTCTTTAAACTCCTTCTTCTCTGTAGATTTGAGGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU311066 lncRNA upstream 498 2361371 ~ 2362637 (+) True G274165
TU311095 lncRNA upstream 2591 2360311 ~ 2360544 (+) True G274193
TU311094 lncRNA upstream 3989 2358931 ~ 2359146 (+) True G274192
TU311077 lncRNA upstream 69968 2292957 ~ 2293167 (+) True G274176
TU311050 lncRNA upstream 87048 2275844 ~ 2276087 (+) True G274152
TU311100 lncRNA downstream 9384 2373985 ~ 2374318 (+) True G274197
TU311110 lncRNA downstream 47231 2411832 ~ 2412196 (+) True G274206
TU311111 lncRNA downstream 47664 2412265 ~ 2423194 (+) True G274207
TU311119 lncRNA downstream 104553 2469154 ~ 2469376 (+) True G274215
TU311130 lncRNA downstream 122368 2486969 ~ 2487307 (+) True G274225
CI01000069_02311794_02313206.mRNA mRNA upstream 48125 2311794 ~ 2315010 (+) True CI01000069_02311794_02313206
CI01000069_02256234_02263001.mRNA mRNA upstream 100014 2256169 ~ 2263121 (+) True CI01000069_02256234_02263001
CI01000069_02228111_02232088.mRNA mRNA upstream 131039 2228111 ~ 2232096 (+) True CI01000069_02228111_02232088
CI01000069_02065642_02154533.mRNA mRNA upstream 208602 2065642 ~ 2154533 (+) True CI01000069_02065642_02154533
CI01000069_02033431_02040119.mRNA mRNA upstream 322708 2031954 ~ 2040427 (+) False CI01000069_02033431_02040119
CI01000069_02393010_02396796.mRNA mRNA downstream 28409 2393010 ~ 2397732 (+) True CI01000069_02393010_02396796
CI01000069_02454588_02465668.mRNA mRNA downstream 89987 2454588 ~ 2465681 (+) True CI01000069_02454588_02465668
CI01000069_02466489_02467309.mRNA mRNA downstream 101179 2465780 ~ 2467397 (+) True CI01000069_02466489_02467309
CI01000069_02540591_02547912.mRNA mRNA downstream 175909 2540510 ~ 2548022 (+) True CI01000069_02540591_02547912
CI01000069_02818349_02821933.mRNA mRNA downstream 453639 2818240 ~ 2821937 (+) True CI01000069_02818349_02821933
TU311015 other upstream 190942 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 1884054 477727 ~ 479081 (+) True G273359
TU311181 other downstream 308023 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 528245 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 1248116 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 1435422 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 1764527 4129128 ~ 4133378 (+) True G274619

Expression Profile