RNA id: TU311110


Basic Information

Item Value
RNA id TU311110
length 365
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G274206
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2411832 ~ 2412196 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTTAACCTGCTGGACCCCTTCAAAAAACAAACAACTAGGTTGTTCCTGCCTACAAACTGGCCAGCTACAGGAGCGTGAAACGCTGCAATAACTGAAACATAAATTTTGAGTGTCGAGGGAGTGCGTCGCTTATCCAACAACTCTTGAAGGAAGGACAATATCAGTGATATGTCACAGGAGGTTGGGTCTTCCTAAAAAAAAAAAACCCTAAAAAAAAAAAAAGAAAAAAAAAAAACCTTTCTTTGAATGGAAATCAATGGAGAAAGATTCTTTCTGGCCTAACATGGTGTAGTGCAGCTTCTACCAGCAGGGGTGAACTGGGTCACGCTAACCAGCCAAACCTTGACCCTTTGAGTAGCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311100 lncRNA upstream 37514 2373985 ~ 2374318 (+) True G274197
TU311054 lncRNA upstream 47231 2363135 ~ 2364601 (+) False G274156
TU311056 lncRNA upstream 47231 2363135 ~ 2364601 (+) True G274156
TU311066 lncRNA upstream 49195 2361371 ~ 2362637 (+) True G274165
TU311095 lncRNA upstream 51288 2360311 ~ 2360544 (+) True G274193
TU311111 lncRNA downstream 69 2412265 ~ 2423194 (+) True G274207
TU311119 lncRNA downstream 56958 2469154 ~ 2469376 (+) True G274215
TU311130 lncRNA downstream 74773 2486969 ~ 2487307 (+) True G274225
TU311131 lncRNA downstream 76936 2489132 ~ 2489630 (+) True G274226
TU311132 lncRNA downstream 79950 2492146 ~ 2498586 (+) True G274227
CI01000069_02393010_02396796.mRNA mRNA upstream 14100 2393010 ~ 2397732 (+) True CI01000069_02393010_02396796
CI01000069_02311794_02313206.mRNA mRNA upstream 96822 2311794 ~ 2315010 (+) True CI01000069_02311794_02313206
CI01000069_02256234_02263001.mRNA mRNA upstream 148711 2256169 ~ 2263121 (+) True CI01000069_02256234_02263001
CI01000069_02228111_02232088.mRNA mRNA upstream 179736 2228111 ~ 2232096 (+) True CI01000069_02228111_02232088
CI01000069_02065642_02154533.mRNA mRNA upstream 257299 2065642 ~ 2154533 (+) True CI01000069_02065642_02154533
CI01000069_02454588_02465668.mRNA mRNA downstream 42392 2454588 ~ 2465681 (+) True CI01000069_02454588_02465668
CI01000069_02466489_02467309.mRNA mRNA downstream 53584 2465780 ~ 2467397 (+) True CI01000069_02466489_02467309
CI01000069_02540591_02547912.mRNA mRNA downstream 128314 2540510 ~ 2548022 (+) True CI01000069_02540591_02547912
CI01000069_02818349_02821933.mRNA mRNA downstream 406044 2818240 ~ 2821937 (+) True CI01000069_02818349_02821933
CI01000069_02857196_02860525.mRNA mRNA downstream 444226 2856422 ~ 2860562 (+) True CI01000069_02857196_02860525
TU311015 other upstream 239639 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 1932751 477727 ~ 479081 (+) True G273359
TU311181 other downstream 260428 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 480650 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 1200521 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 1387827 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 1716932 4129128 ~ 4133378 (+) True G274619

Expression Profile