RNA id: TU311159


Basic Information

Item Value
RNA id TU311159
length 227
lncRNA type intronic
GC content 0.33
exon number 1
gene id G274253
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2543964 ~ 2544190 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGTTTCTGAATGAAAGATTAACATTACAGGAGTGCTTTAAATCTAGAGCTGGACTGCCCTACAAACACTTCCTGGTCACGGACTAACAAATCTACACGAACCATAAGCCATACATTACTGATTTTAGTTTTGTCTTTTATCTCACCATAAAAGTATTTATTTTTCGAAATCTTGATTTAAAAGTTGTCTCGTTTTTTTTTTCTTTGTCAAGGGGTATCAAAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311156 lncRNA upstream 5295 2538443 ~ 2538669 (+) True G274250
TU311132 lncRNA upstream 45378 2492146 ~ 2498586 (+) True G274227
TU311131 lncRNA upstream 54334 2489132 ~ 2489630 (+) True G274226
TU311130 lncRNA upstream 56657 2486969 ~ 2487307 (+) True G274225
TU311119 lncRNA upstream 74588 2469154 ~ 2469376 (+) True G274215
TU311144 lncRNA downstream 4857 2549047 ~ 2552438 (+) True G274238
TU311143 lncRNA downstream 11509 2555699 ~ 2563126 (+) True G274237
TU311136 lncRNA downstream 37692 2581882 ~ 2583267 (+) True G274231
TU311186 lncRNA downstream 77568 2621758 ~ 2630358 (+) True G274272
TU311200 lncRNA downstream 99345 2643535 ~ 2643776 (+) True G274286
CI01000069_02466489_02467309.mRNA mRNA upstream 76567 2465780 ~ 2467397 (+) True CI01000069_02466489_02467309
CI01000069_02454588_02465668.mRNA mRNA upstream 78283 2454588 ~ 2465681 (+) True CI01000069_02454588_02465668
CI01000069_02393010_02396796.mRNA mRNA upstream 146232 2393010 ~ 2397732 (+) True CI01000069_02393010_02396796
CI01000069_02311794_02313206.mRNA mRNA upstream 228954 2311794 ~ 2315010 (+) True CI01000069_02311794_02313206
CI01000069_02256234_02263001.mRNA mRNA upstream 280843 2256169 ~ 2263121 (+) True CI01000069_02256234_02263001
CI01000069_02818349_02821933.mRNA mRNA downstream 274050 2818240 ~ 2821937 (+) True CI01000069_02818349_02821933
CI01000069_02857196_02860525.mRNA mRNA downstream 312232 2856422 ~ 2860562 (+) True CI01000069_02857196_02860525
CI01000069_02862381_02864927.mRNA mRNA downstream 317464 2861654 ~ 2864993 (+) True CI01000069_02862381_02864927
CI01000069_02894136_02894807.mRNA mRNA downstream 349228 2893418 ~ 2894947 (+) False CI01000069_02894136_02894807
CI01000069_02903983_02905418.mRNA mRNA downstream 359793 2903983 ~ 2905654 (+) True CI01000069_02903983_02905418
TU311015 other upstream 371771 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 2064883 477727 ~ 479081 (+) True G273359
TU311181 other downstream 128434 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 348656 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 1068527 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 1255833 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 1584938 4129128 ~ 4133378 (+) True G274619

Expression Profile