RNA id: TU311143


Basic Information

Item Value
RNA id TU311143
length 285
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G274237
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2555699 ~ 2563126 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGCCATGCGTAACGGGGATGGGGCCCGGCGGTCTGTTGAGGAAGTTCTGATTGGGTGGGACCTGTCCAGGTTGCATCGAGCGGTGCTGCTGCACTTGTTTATGGTTAGTGATGACCTGCCGAATACCATTGACGAATCCGCTCTGGTCATTAGGGATGAGTCCCATGAAGATCCTCTTCCTAGACGAGTACAGCAGCATCAGCACACGCACCTCACATGGAGCACTGTGGGGGAAGTGCACACAGCCAGCCTACACACACACACGCGCACACACACACACACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311144 lncRNA upstream 3261 2549047 ~ 2552438 (+) True G274238
TU311159 lncRNA upstream 11509 2543964 ~ 2544190 (+) True G274253
TU311156 lncRNA upstream 17030 2538443 ~ 2538669 (+) True G274250
TU311132 lncRNA upstream 57113 2492146 ~ 2498586 (+) True G274227
TU311131 lncRNA upstream 66069 2489132 ~ 2489630 (+) True G274226
TU311136 lncRNA downstream 18756 2581882 ~ 2583267 (+) True G274231
TU311186 lncRNA downstream 58632 2621758 ~ 2630358 (+) True G274272
TU311200 lncRNA downstream 80409 2643535 ~ 2643776 (+) True G274286
TU311185 lncRNA downstream 92207 2655333 ~ 2656534 (+) True G274271
TU311180 lncRNA downstream 97242 2660368 ~ 2669042 (+) True G274269
CI01000069_02540591_02547912.mRNA mRNA upstream 7677 2540510 ~ 2548022 (+) True CI01000069_02540591_02547912
CI01000069_02466489_02467309.mRNA mRNA upstream 88302 2465780 ~ 2467397 (+) True CI01000069_02466489_02467309
CI01000069_02454588_02465668.mRNA mRNA upstream 90018 2454588 ~ 2465681 (+) True CI01000069_02454588_02465668
CI01000069_02393010_02396796.mRNA mRNA upstream 157967 2393010 ~ 2397732 (+) True CI01000069_02393010_02396796
CI01000069_02311794_02313206.mRNA mRNA upstream 240689 2311794 ~ 2315010 (+) True CI01000069_02311794_02313206
CI01000069_02818349_02821933.mRNA mRNA downstream 255114 2818240 ~ 2821937 (+) True CI01000069_02818349_02821933
CI01000069_02857196_02860525.mRNA mRNA downstream 293296 2856422 ~ 2860562 (+) True CI01000069_02857196_02860525
CI01000069_02862381_02864927.mRNA mRNA downstream 298528 2861654 ~ 2864993 (+) True CI01000069_02862381_02864927
CI01000069_02894136_02894807.mRNA mRNA downstream 330292 2893418 ~ 2894947 (+) False CI01000069_02894136_02894807
CI01000069_02903983_02905418.mRNA mRNA downstream 340857 2903983 ~ 2905654 (+) True CI01000069_02903983_02905418
TU311015 other upstream 383506 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 2076618 477727 ~ 479081 (+) True G273359
TU311181 other downstream 109498 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 329720 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 1049591 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 1236897 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 1566002 4129128 ~ 4133378 (+) True G274619

Expression Profile