RNA id: TU311297


Basic Information

Item Value
RNA id TU311297
length 371
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G274380
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2763647 ~ 2764017 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGTAGGCAGCTGCACTATTAAAAAAAATGCAGTTTAACTGCACAATGGCTGCTAAAAATGACAACAAAGCCAGCAAAGATTGCAGTTCAGTCTCCATTTCATTGTTTACACGGTCATCAAGGATACGCAGAGCGAACATGGGCAGCCACGGCATCATTTTCAGAAGTCTCCGTTTTGGTCCATTTATACTGAAAATCAACCCCGGTGTTTACAAACTAAAACGGGGTCAGCAGCATTTTCGAAAGTCTCCGTTTTCGAGGTTCAAAAACACCGACGTAGTGTAAAAGACAGGCGTAACTGTAGCAAAACGTATGCATTTTTTTAAAAACAAAAACGCACTAGTGTAAACGGGGCCTTAGAAGGCCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311296 lncRNA upstream 123 2762132 ~ 2763524 (+) True G274379
TU311295 lncRNA upstream 4542 2758769 ~ 2759105 (+) True G274378
TU311294 lncRNA upstream 6875 2756519 ~ 2756772 (+) True G274377
TU311293 lncRNA upstream 7319 2756076 ~ 2756328 (+) True G274376
TU311292 lncRNA upstream 7908 2754607 ~ 2755739 (+) True G274375
TU311298 lncRNA downstream 241 2764258 ~ 2764483 (+) True G274381
TU311299 lncRNA downstream 580 2764597 ~ 2765464 (+) True G274382
TU311300 lncRNA downstream 1465 2765482 ~ 2765725 (+) True G274383
TU311301 lncRNA downstream 2263 2766280 ~ 2766605 (+) True G274384
TU311302 lncRNA downstream 2804 2766821 ~ 2768439 (+) True G274385
CI01000069_02540591_02547912.mRNA mRNA upstream 215625 2540510 ~ 2548022 (+) True CI01000069_02540591_02547912
CI01000069_02466489_02467309.mRNA mRNA upstream 296250 2465780 ~ 2467397 (+) True CI01000069_02466489_02467309
CI01000069_02454588_02465668.mRNA mRNA upstream 297966 2454588 ~ 2465681 (+) True CI01000069_02454588_02465668
CI01000069_02393010_02396796.mRNA mRNA upstream 365915 2393010 ~ 2397732 (+) True CI01000069_02393010_02396796
CI01000069_02311794_02313206.mRNA mRNA upstream 448637 2311794 ~ 2315010 (+) True CI01000069_02311794_02313206
CI01000069_02818349_02821933.mRNA mRNA downstream 54223 2818240 ~ 2821937 (+) True CI01000069_02818349_02821933
CI01000069_02857196_02860525.mRNA mRNA downstream 92405 2856422 ~ 2860562 (+) True CI01000069_02857196_02860525
CI01000069_02862381_02864927.mRNA mRNA downstream 97637 2861654 ~ 2864993 (+) True CI01000069_02862381_02864927
CI01000069_02894136_02894807.mRNA mRNA downstream 129401 2893418 ~ 2894947 (+) False CI01000069_02894136_02894807
CI01000069_02903983_02905418.mRNA mRNA downstream 139966 2903983 ~ 2905654 (+) True CI01000069_02903983_02905418
TU311181 other upstream 82489 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 591454 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 2284566 477727 ~ 479081 (+) True G273359
TU311230 other downstream 128829 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 848700 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 1036006 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 1365111 4129128 ~ 4133378 (+) True G274619
TU311605 other downstream 1791292 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002

Expression Profile