RNA id: TU311298


Basic Information

Item Value
RNA id TU311298
length 226
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G274381
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2764258 ~ 2764483 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGTTTTCTAAGTCTAGAAATTACACTTTTAATATTAAGCTACTGCATATGACAGTGGGAACCCTGGTTCTTCAAAGAAAAAATATGCTGATTTTTTAGTTAGTTGAGATTAATCTCATGATTGCTGTCTTTAAAAAGTAGGAGGAGGGGGGGAACAGTAATGTCAGTCTATTTATTTAGTTAACTTTTTTTGCTTAAATTTTCAATGGATTCCCTGGCAAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311297 lncRNA upstream 241 2763647 ~ 2764017 (+) True G274380
TU311296 lncRNA upstream 734 2762132 ~ 2763524 (+) True G274379
TU311295 lncRNA upstream 5153 2758769 ~ 2759105 (+) True G274378
TU311294 lncRNA upstream 7486 2756519 ~ 2756772 (+) True G274377
TU311293 lncRNA upstream 7930 2756076 ~ 2756328 (+) True G274376
TU311299 lncRNA downstream 114 2764597 ~ 2765464 (+) True G274382
TU311300 lncRNA downstream 999 2765482 ~ 2765725 (+) True G274383
TU311301 lncRNA downstream 1797 2766280 ~ 2766605 (+) True G274384
TU311302 lncRNA downstream 2338 2766821 ~ 2768439 (+) True G274385
TU311303 lncRNA downstream 5208 2769691 ~ 2769922 (+) True G274386
CI01000069_02540591_02547912.mRNA mRNA upstream 216236 2540510 ~ 2548022 (+) True CI01000069_02540591_02547912
CI01000069_02466489_02467309.mRNA mRNA upstream 296861 2465780 ~ 2467397 (+) True CI01000069_02466489_02467309
CI01000069_02454588_02465668.mRNA mRNA upstream 298577 2454588 ~ 2465681 (+) True CI01000069_02454588_02465668
CI01000069_02393010_02396796.mRNA mRNA upstream 366526 2393010 ~ 2397732 (+) True CI01000069_02393010_02396796
CI01000069_02311794_02313206.mRNA mRNA upstream 449248 2311794 ~ 2315010 (+) True CI01000069_02311794_02313206
CI01000069_02818349_02821933.mRNA mRNA downstream 53757 2818240 ~ 2821937 (+) True CI01000069_02818349_02821933
CI01000069_02857196_02860525.mRNA mRNA downstream 91939 2856422 ~ 2860562 (+) True CI01000069_02857196_02860525
CI01000069_02862381_02864927.mRNA mRNA downstream 97171 2861654 ~ 2864993 (+) True CI01000069_02862381_02864927
CI01000069_02894136_02894807.mRNA mRNA downstream 128935 2893418 ~ 2894947 (+) False CI01000069_02894136_02894807
CI01000069_02903983_02905418.mRNA mRNA downstream 139500 2903983 ~ 2905654 (+) True CI01000069_02903983_02905418
TU311181 other upstream 83100 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 592065 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 2285177 477727 ~ 479081 (+) True G273359
TU311230 other downstream 128363 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 848234 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 1035540 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 1364645 4129128 ~ 4133378 (+) True G274619
TU311605 other downstream 1790826 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002

Expression Profile