RNA id: TU311311


Basic Information

Item Value
RNA id TU311311
length 212
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G274391
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2776816 ~ 2777027 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCAGGTATAGTTCAACATACAATTTTGTGCTAAATTAGCATTGAAACATTGTGGAACTTGAAGGACCAGTTAAGAGCAGAATTCATCGTTCACTTCTGGATCGATTTCATACCCTTCAGACACTAATACTGGCAGTTTGTCTGCTTCACCAGTTTCACATCTAAATGGGTGAAAGCGCCTCCTCCTGTCTACTGTCCTAATCTATTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311310 lncRNA upstream 667 2775858 ~ 2776149 (+) True G274390
TU311308 lncRNA upstream 3212 2772336 ~ 2773604 (+) False G274388
TU311305 lncRNA upstream 3212 2773181 ~ 2773604 (+) True G274388
TU311304 lncRNA upstream 6500 2770009 ~ 2770316 (+) True G274387
TU311303 lncRNA upstream 6894 2769691 ~ 2769922 (+) True G274386
TU311256 lncRNA downstream 2529 2779556 ~ 2780284 (+) True G274339
TU311259 lncRNA downstream 21357 2798384 ~ 2800201 (+) True G274342
TU311234 lncRNA downstream 28086 2805113 ~ 2811452 (+) True G274317
TU311315 lncRNA downstream 35418 2812445 ~ 2812851 (+) True G274395
TU311316 lncRNA downstream 37644 2814671 ~ 2814906 (+) True G274396
CI01000069_02540591_02547912.mRNA mRNA upstream 228794 2540510 ~ 2548022 (+) True CI01000069_02540591_02547912
CI01000069_02466489_02467309.mRNA mRNA upstream 309419 2465780 ~ 2467397 (+) True CI01000069_02466489_02467309
CI01000069_02454588_02465668.mRNA mRNA upstream 311135 2454588 ~ 2465681 (+) True CI01000069_02454588_02465668
CI01000069_02393010_02396796.mRNA mRNA upstream 379084 2393010 ~ 2397732 (+) True CI01000069_02393010_02396796
CI01000069_02311794_02313206.mRNA mRNA upstream 461806 2311794 ~ 2315010 (+) True CI01000069_02311794_02313206
CI01000069_02818349_02821933.mRNA mRNA downstream 41213 2818240 ~ 2821937 (+) True CI01000069_02818349_02821933
CI01000069_02857196_02860525.mRNA mRNA downstream 79395 2856422 ~ 2860562 (+) True CI01000069_02857196_02860525
CI01000069_02862381_02864927.mRNA mRNA downstream 84627 2861654 ~ 2864993 (+) True CI01000069_02862381_02864927
CI01000069_02894136_02894807.mRNA mRNA downstream 116391 2893418 ~ 2894947 (+) False CI01000069_02894136_02894807
CI01000069_02903983_02905418.mRNA mRNA downstream 126956 2903983 ~ 2905654 (+) True CI01000069_02903983_02905418
TU311181 other upstream 95658 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 604623 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 2297735 477727 ~ 479081 (+) True G273359
TU311230 other downstream 115819 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 835690 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 1022996 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 1352101 4129128 ~ 4133378 (+) True G274619
TU311605 other downstream 1778282 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002

Expression Profile