RNA id: TU311315


Basic Information

Item Value
RNA id TU311315
length 407
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G274395
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2812445 ~ 2812851 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGAAATTGCCCAGCCATGACTTCCTGTTCCACAGGAGTATAAACATGAGGAAACACAAAATTCCCGTAATCATTCATCACAATGAGAAAAACCAAAGAATATAGTCCTGATGTGCAGCAAAAGATTTTTAAGCTTCACAAAATAGAAAGTGGCTGTAAGAAAATAGCTAAAGCATTGAAAATCCCCATTTCCTCCATCAGGGCAATAATTAAGAAGTTCCAATCAACTAAAGATGTTACAAATCTGCCTGGAAGAGGACGTGTGTCTATATTGTCCTAATGCGCGGTGAGGAGGAAAGTTTGAGTGGCCAAAGACTCTCCAAGGATCACAGCTGGAGAATTGCAGAGATTAGTTGAGTCTTGAGCCTCAGAAAGCCTAAAAAAATTATCAAACAGCACCTACATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311234 lncRNA upstream 993 2805113 ~ 2811452 (+) True G274317
TU311259 lncRNA upstream 12244 2798384 ~ 2800201 (+) True G274342
TU311256 lncRNA upstream 32161 2779556 ~ 2780284 (+) True G274339
TU311311 lncRNA upstream 35418 2776816 ~ 2777027 (+) True G274391
TU311310 lncRNA upstream 36296 2775858 ~ 2776149 (+) True G274390
TU311316 lncRNA downstream 1820 2814671 ~ 2814906 (+) True G274396
TU311320 lncRNA downstream 21215 2834066 ~ 2834300 (+) True G274400
TU311319 lncRNA downstream 21856 2834707 ~ 2840042 (+) True G274399
TU311323 lncRNA downstream 31879 2844730 ~ 2845169 (+) True G274403
TU311273 lncRNA downstream 40569 2853420 ~ 2855597 (+) True G274356
CI01000069_02540591_02547912.mRNA mRNA upstream 264423 2540510 ~ 2548022 (+) True CI01000069_02540591_02547912
CI01000069_02466489_02467309.mRNA mRNA upstream 345048 2465780 ~ 2467397 (+) True CI01000069_02466489_02467309
CI01000069_02454588_02465668.mRNA mRNA upstream 346764 2454588 ~ 2465681 (+) True CI01000069_02454588_02465668
CI01000069_02393010_02396796.mRNA mRNA upstream 414713 2393010 ~ 2397732 (+) True CI01000069_02393010_02396796
CI01000069_02311794_02313206.mRNA mRNA upstream 497435 2311794 ~ 2315010 (+) True CI01000069_02311794_02313206
CI01000069_02818349_02821933.mRNA mRNA downstream 5389 2818240 ~ 2821937 (+) True CI01000069_02818349_02821933
CI01000069_02857196_02860525.mRNA mRNA downstream 43571 2856422 ~ 2860562 (+) True CI01000069_02857196_02860525
CI01000069_02862381_02864927.mRNA mRNA downstream 48803 2861654 ~ 2864993 (+) True CI01000069_02862381_02864927
CI01000069_02894136_02894807.mRNA mRNA downstream 80567 2893418 ~ 2894947 (+) False CI01000069_02894136_02894807
CI01000069_02903983_02905418.mRNA mRNA downstream 91132 2903983 ~ 2905654 (+) True CI01000069_02903983_02905418
TU311181 other upstream 131287 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 640252 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 2333364 477727 ~ 479081 (+) True G273359
TU311230 other downstream 79995 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 799866 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 987172 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 1316277 4129128 ~ 4133378 (+) True G274619
TU311605 other downstream 1742458 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002

Expression Profile