RNA id: TU311320


Basic Information

Item Value
RNA id TU311320
length 235
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G274400
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2834066 ~ 2834300 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGAGCATCTGTGGGGCATCCTCAAACGGAAGGTGGAGGAGCGCAAGGTCTCTAACATCCACCAGCTCCGTGATGTCGTCATGGAGGAGTGGAAGAGGACTCCAGTGTCAACCTGTGAAGCTCTGGTGAACTCCATGCCCAAGAGGGTTAAGGCAGTGCTGGAAAATAATGGTGGCCACACAAAATATTGACACTTCGGGCCCAATTTGGACATTTTCACTTAGGGGTGTACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311316 lncRNA upstream 19160 2814671 ~ 2814906 (+) True G274396
TU311315 lncRNA upstream 21215 2812445 ~ 2812851 (+) True G274395
TU311234 lncRNA upstream 22614 2805113 ~ 2811452 (+) True G274317
TU311259 lncRNA upstream 33865 2798384 ~ 2800201 (+) True G274342
TU311256 lncRNA upstream 53782 2779556 ~ 2780284 (+) True G274339
TU311319 lncRNA downstream 407 2834707 ~ 2840042 (+) True G274399
TU311323 lncRNA downstream 10430 2844730 ~ 2845169 (+) True G274403
TU311273 lncRNA downstream 19120 2853420 ~ 2855597 (+) True G274356
TU311332 lncRNA downstream 45339 2879639 ~ 2882570 (+) True G274412
TU311334 lncRNA downstream 55463 2889763 ~ 2889973 (+) True G274414
CI01000069_02818349_02821933.mRNA mRNA upstream 12129 2818240 ~ 2821937 (+) True CI01000069_02818349_02821933
CI01000069_02540591_02547912.mRNA mRNA upstream 286044 2540510 ~ 2548022 (+) True CI01000069_02540591_02547912
CI01000069_02466489_02467309.mRNA mRNA upstream 366669 2465780 ~ 2467397 (+) True CI01000069_02466489_02467309
CI01000069_02454588_02465668.mRNA mRNA upstream 368385 2454588 ~ 2465681 (+) True CI01000069_02454588_02465668
CI01000069_02393010_02396796.mRNA mRNA upstream 436334 2393010 ~ 2397732 (+) True CI01000069_02393010_02396796
CI01000069_02857196_02860525.mRNA mRNA downstream 22122 2856422 ~ 2860562 (+) True CI01000069_02857196_02860525
CI01000069_02862381_02864927.mRNA mRNA downstream 27354 2861654 ~ 2864993 (+) True CI01000069_02862381_02864927
CI01000069_02894136_02894807.mRNA mRNA downstream 59118 2893418 ~ 2894947 (+) False CI01000069_02894136_02894807
CI01000069_02903983_02905418.mRNA mRNA downstream 69683 2903983 ~ 2905654 (+) True CI01000069_02903983_02905418
CI01000069_02927711_02933564.mRNA mRNA downstream 93137 2927437 ~ 2933579 (+) True CI01000069_02927711_02933564
TU311181 other upstream 152908 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 661873 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 2354985 477727 ~ 479081 (+) True G273359
TU311230 other downstream 58546 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 778417 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 965723 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 1294828 4129128 ~ 4133378 (+) True G274619
TU311605 other downstream 1721009 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002

Expression Profile