RNA id: TU312791


Basic Information

Item Value
RNA id TU312791
length 565
RNA type TUCP
GC content 0.37
exon number 2
gene id G275699
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2992504 ~ 3078168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTAAAAAGTTGATTTATTTCACTAATTCCATTCAAAAAGTGAAACTTGTATATTATATTCATTCATTACACTCAGACTGATATATTTCAAATGTTTATTTCTTTTAATTTTGATGATTATAACTGACAACTAAGGAAAATCCCAAATTCAGTATCTCAGAAAATTAGAATATCGTGAAAAGGTTCAATATTGAAGACACCTGGTGCCACACTCTAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGGTCTCTCAGTCTAGTTCTGTAGGCTACACAATCATGGGGAAGACTGCTGACTTGACAGTCGTCCAAAAGACGACCATTGACATCTTGCACAAGGAGGGCAAGACACAAAAGGTCATTGCAAAAGAGGCTGGCTGTTCACAGAGCTCTGTGTCCAAGCACATTAATAGAGAGGCGAAGGGAAGGAAAAGATGTGGTAGAAAAAAGTGTACAAGCAATAGGGATAACCGCACCCTGGAGAGGATTGTGAAACAAAACCCATTCAAAAATGTGGGGGAGNNNNNNNNNNNNNNNNCTGCAGCTGGAGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312750 lncRNA downstream 97538 2892738 ~ 2894966 (-) True G275658
TU312773 lncRNA downstream 223192 2768956 ~ 2769312 (-) True G275681
TU312764 lncRNA downstream 351970 2640335 ~ 2640534 (-) True G275672
TU312763 lncRNA downstream 352466 2639787 ~ 2640038 (-) True G275671
TU312762 lncRNA downstream 352755 2639512 ~ 2639749 (-) True G275670
TU312939 lncRNA upstream 141641 3219809 ~ 3220041 (-) True G275843
TU312952 lncRNA upstream 183128 3261296 ~ 3261504 (-) True G275856
TU312910 lncRNA upstream 202744 3280912 ~ 3284191 (-) True G275814
TU312868 lncRNA upstream 228321 3306489 ~ 3312896 (-) True G275772
TU312972 lncRNA upstream 279053 3357221 ~ 3357421 (-) True G275876
CI01000069_02944962_02977798.mRNA mRNA downstream 14706 2944833 ~ 2977798 (-) True CI01000069_02944962_02977798
CI01000069_02934862_02943383.mRNA mRNA downstream 49121 2934092 ~ 2943383 (-) True CI01000069_02934862_02943383
CI01000069_02911501_02921826.mRNA mRNA downstream 69817 2911481 ~ 2922687 (-) True CI01000069_02911501_02921826
CI01000069_02906527_02909006.mRNA mRNA downstream 83498 2906049 ~ 2909006 (-) True CI01000069_02906527_02909006
CI01000069_02895817_02903000.mRNA mRNA downstream 89504 2895690 ~ 2903000 (-) True CI01000069_02895817_02903000
CI01000069_03242808_03248880.mRNA mRNA upstream 163651 3241819 ~ 3248880 (-) True CI01000069_03242808_03248880
CI01000069_03298533_03302831.mRNA mRNA upstream 220029 3298197 ~ 3302831 (-) True CI01000069_03298533_03302831
CI01000069_03315611_03353645.mRNA mRNA upstream 237344 3315512 ~ 3353733 (-) True CI01000069_03315611_03353645
CI01000069_03365921_03371931.mRNA mRNA upstream 287295 3365463 ~ 3371944 (-) True CI01000069_03365921_03371931
CI01000069_03382399_03395900.mRNA mRNA upstream 303964 3382132 ~ 3395900 (-) True CI01000069_03382399_03395900
TU312711 other downstream 362188 2621752 ~ 2630316 (-) True G275624
TU312710 other downstream 362257 2621752 ~ 2630247 (-) False G275624
TU312389 other downstream 1345178 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312233 other downstream 2036714 813235 ~ 954003 (-) True G275196
TU312851 other upstream 334805 3426149 ~ 3426374 (-) True G275755
TU312899 other upstream 485125 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312875 other upstream 687505 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312842 other upstream 726448 3805663 ~ 3805758 (-) True G275746
TU313201 other upstream 1861353 4942073 ~ 4942199 (-) True G276079

Expression Profile