RNA id: TU312972



Basic Information


Item Value
RNA id TU312972
length 201
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G275876
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3357221 ~ 3357421 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTAACATATTTCAAATCTGCAACAAAATCTGACATGAACTGTCCCATAAATGTTGTTTCTTACGCTCAAATACCCTGTGCATGTGCAGTCCTAAGTGCTAGTCTCAGGTTTCTATGGGAACCGGAGCTTCTAACGGCAGCTACAGTGACACAATTAATTTACAGGGTTGGAGCTATAGGGATACAGCTAAGATAAGACTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312868 lncRNA downstream 44325 3306489 ~ 3312896 (-) True G275772
TU312910 lncRNA downstream 73030 3280912 ~ 3284191 (-) True G275814
TU312952 lncRNA downstream 95717 3261296 ~ 3261504 (-) True G275856
TU312939 lncRNA downstream 137180 3219809 ~ 3220041 (-) True G275843
TU312750 lncRNA downstream 462255 2892738 ~ 2894966 (-) True G275658
TU312974 lncRNA upstream 3067 3360488 ~ 3360701 (-) True G275878
TU312846 lncRNA upstream 238300 3595721 ~ 3627754 (-) True G275750
TU312922 lncRNA upstream 250031 3607452 ~ 3614839 (-) True G275826
TU312850 lncRNA upstream 255332 3612753 ~ 3636263 (-) True G275754
TU312924 lncRNA upstream 256897 3614318 ~ 3633114 (-) True G275828
CI01000069_03315611_03353645.mRNA mRNA downstream 3488 3315512 ~ 3353733 (-) True CI01000069_03315611_03353645
CI01000069_03298533_03302831.mRNA mRNA downstream 54390 3298197 ~ 3302831 (-) True CI01000069_03298533_03302831
CI01000069_03242808_03248880.mRNA mRNA downstream 108341 3241819 ~ 3248880 (-) True CI01000069_03242808_03248880
CI01000069_03032171_03032924.mRNA mRNA downstream 324297 3031990 ~ 3032924 (-) True CI01000069_03032171_03032924
CI01000069_03027056_03028752.mRNA mRNA downstream 328469 3026925 ~ 3028752 (-) True CI01000069_03027056_03028752
CI01000069_03365921_03371931.mRNA mRNA upstream 8042 3365463 ~ 3371944 (-) True CI01000069_03365921_03371931
CI01000069_03382399_03395900.mRNA mRNA upstream 24711 3382132 ~ 3395900 (-) True CI01000069_03382399_03395900
CI01000069_03415853_03417644.mRNA mRNA upstream 56704 3414125 ~ 3417644 (-) False CI01000069_03415853_03417644
CI01000069_03430311_03432182.mRNA mRNA upstream 72862 3430283 ~ 3432207 (-) True CI01000069_03430311_03432182
CI01000069_03433325_03435163.mRNA mRNA upstream 75866 3433287 ~ 3435275 (-) True CI01000069_03433325_03435163
TU312791 other downstream 279053 2992504 ~ 3078168 (-) True G275699
TU312760 other downstream 356788 2989026 ~ 2991817 (-) True G275668
TU312711 other downstream 726905 2621752 ~ 2630316 (-) True G275624
TU312710 other downstream 726974 2621752 ~ 2630247 (-) False G275624
TU312389 other downstream 1709895 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312851 other upstream 55552 3426149 ~ 3426374 (-) True G275755
TU312899 other upstream 205872 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312875 other upstream 408252 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312842 other upstream 447195 3805663 ~ 3805758 (-) True G275746
TU313201 other upstream 1582100 4942073 ~ 4942199 (-) True G276079

Expression Profile