RNA id: TU312974


Basic Information

Item Value
RNA id TU312974
length 214
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G275878
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3360488 ~ 3360701 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCTTTCAGCTGTGCTGCCGTTCTGGATTAAAGAAGAATAGGATACAGGAAAAGGAAGTTCAACAGTCTAAATCTAAATTTCTAAGTCTAATCTAATGTAATTTTTACCTATTAGTATGATTGAACTAGATCATTGAAGGTCAGCAGCAAAGACATTGGTTAATAAAGTGAGATTAAGAACATGAAGTATATTTGTGAAATTTAATATAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312972 lncRNA downstream 3067 3357221 ~ 3357421 (-) True G275876
TU312868 lncRNA downstream 47592 3306489 ~ 3312896 (-) True G275772
TU312910 lncRNA downstream 76297 3280912 ~ 3284191 (-) True G275814
TU312952 lncRNA downstream 98984 3261296 ~ 3261504 (-) True G275856
TU312939 lncRNA downstream 140447 3219809 ~ 3220041 (-) True G275843
TU312846 lncRNA upstream 235020 3595721 ~ 3627754 (-) True G275750
TU312922 lncRNA upstream 246751 3607452 ~ 3614839 (-) True G275826
TU312850 lncRNA upstream 252052 3612753 ~ 3636263 (-) True G275754
TU312924 lncRNA upstream 253617 3614318 ~ 3633114 (-) True G275828
TU313017 lncRNA upstream 375953 3736654 ~ 3736958 (-) True G275920
CI01000069_03315611_03353645.mRNA mRNA downstream 6755 3315512 ~ 3353733 (-) True CI01000069_03315611_03353645
CI01000069_03298533_03302831.mRNA mRNA downstream 57657 3298197 ~ 3302831 (-) True CI01000069_03298533_03302831
CI01000069_03242808_03248880.mRNA mRNA downstream 111608 3241819 ~ 3248880 (-) True CI01000069_03242808_03248880
CI01000069_03032171_03032924.mRNA mRNA downstream 327564 3031990 ~ 3032924 (-) True CI01000069_03032171_03032924
CI01000069_03027056_03028752.mRNA mRNA downstream 331736 3026925 ~ 3028752 (-) True CI01000069_03027056_03028752
CI01000069_03365921_03371931.mRNA mRNA upstream 4762 3365463 ~ 3371944 (-) True CI01000069_03365921_03371931
CI01000069_03382399_03395900.mRNA mRNA upstream 21431 3382132 ~ 3395900 (-) True CI01000069_03382399_03395900
CI01000069_03415853_03417644.mRNA mRNA upstream 53424 3414125 ~ 3417644 (-) False CI01000069_03415853_03417644
CI01000069_03430311_03432182.mRNA mRNA upstream 69582 3430283 ~ 3432207 (-) True CI01000069_03430311_03432182
CI01000069_03433325_03435163.mRNA mRNA upstream 72586 3433287 ~ 3435275 (-) True CI01000069_03433325_03435163
TU312791 other downstream 282320 2992504 ~ 3078168 (-) True G275699
TU312760 other downstream 360055 2989026 ~ 2991817 (-) True G275668
TU312711 other downstream 730172 2621752 ~ 2630316 (-) True G275624
TU312710 other downstream 730241 2621752 ~ 2630247 (-) False G275624
TU312389 other downstream 1713162 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312851 other upstream 52272 3426149 ~ 3426374 (-) True G275755
TU312899 other upstream 202592 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312875 other upstream 404972 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312842 other upstream 443915 3805663 ~ 3805758 (-) True G275746
TU313201 other upstream 1578820 4942073 ~ 4942199 (-) True G276079

Expression Profile