RNA id: TU311505



Basic Information


Item Value
RNA id TU311505
length 5043
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G274553
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3362083 ~ 3368574 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATAGATTCTTAAGTATTTGCCTGGGCAGTGTATATTCTCTCTTTATCTGTATAGCTTACAGTTTTTATTCATGACATGTTTATCCTCATTTTTGTAGGTTACTATTAGATAATGCAATGAAATTTCTTAAGTTAGCCTACCCAATGCAATTTGACAAGAAAGAAAATACAAAACATTAATGGGTTAGAAGACCATTTTTGTTCAGAATGCTGTCACCTTTAATTTGACCCTAAATTATTCACTGATATTGCAAGTAATGAAATGAGTGCTGTTTATAATATAATTCTTACTTCTGCCAATGAATACTGAATATTATTGACATCATACTGCCCTTTGTAGACCCAGAGTATGAGTATGTCACTTCATATGGTCTCTAAATAAGATGCTGTTACGTACTTGTAAGTGAGATATTTCACTTTGTAAACCTGTGAGAAGATTTCAGGTTGAGAATGTTCTTTGGTTTTAAATTTCATTACACCTCCTCTTCCTGGGAAGGATTCATTATCTTGATATCCAGGACATCAAAATCTTAAATAAGAGCAAACCTAGTTCTGCAGTAACTTAGCTATTGTCTGTCAGCATACCCTGACAAAGACGTGTAATCCCCTCTAACCAAGCGTGGAATCCATTCTCTGTCAGTGACCCTGTCAAACACACCTGTCACTCAAACTTTCTGCCCCCTTGATATGCTCACATGTGACAGATCACTGTCACTTCCTATTTCATTCACTTTTAAGTCATTATTAAACAAGCAGAATGCATCAGTTGCAATGATGACATAGTATTTCTTCTATAAGCTTAAAAACAGAACAGACACCACCGAATATTTTTTTTAATTTTTTTATTACTATTAATGTTAGCCACCACAATACAGTGACGTCCATTTCAGTATGCAAGAGTAATGTGAAAGTTAGTCCTCTTCATTTGAAAACATAGTTCAGTGTTACTTAGCAGTATTATCTCACAGTAAAGGTGCGATCAGACTGCGGCTAGATTTTGCATGCAAAAAAAAAAGGTCCATTATCAATAAATGTTACACAGAAGTCAAACCGAGCAGCTTTTTGTTGGTCAGAGCAGCTAATTCACAAACATGAACATAATATGCATGGGAAACTTTTTCGCCCTCATTCGAATCTCCCAATCACGTGTATTCCTATTGGAATGACTGGATTTTGCCTGCAAAATTTTACAGAGTAATGGTAAATATGGCTGCATCTTAAAACAATAGAAAAGGCATCAGTAGCAAAATTCCATTAATTCATCTGTTTATATGATGGGTAACACTATGTCAGATGTTTATAATGAGTTCAGTAAGATGATGTTTTTTTGTTGTTGTTGTTGTTGTTGATTAAAATGTACAATTAATATGTTTTCTATAGGTCAGTCAAGTCAAAAAGCAATTTTATCCTGGGTTCAAAGAGATGAGTTAGCGACTGTGCAAAAACATTGTGCACACACAGTGAAGGAGGAAAAATGTTCATAGCACCGCTGACACAATCCATCATCCATTTAAAACTCTCACAAAGATCTTGCTGTTATAGTTCCCTTCTGCCTTACTTTAACACTGACCATTCAGATTCAAAAACTACCGGTTCCAAACCTGCTCTTCTTCATTCTTAATGACTACAATACATTTCAGAATTAAATCTCTACAGTTTGTGCTTGACAAAAAACTACAATCCCCATGTACTCGCTCTGACCACTAGAAACATTTTGTTCTACTTTCTACTTTCATCTTTCCAACCATGACTATTTATGGCACAATCGGCGATAAACTAGTCTAATGTCATGCTAATACTCTTCGCCACAAAAGAGACAGATACTGTAAAGAGAGAAGCCCAGGAAGAGACAGAGATCAAAACGTAGTTATGTATCGCTTATTGTTGCTAATGTAATTGAATATAGTTCCCAGGAACTATATACACTAGGAGAAAATAAGCGGGGAAAGTTGACAAGAAATCACATTTGATCGCAGCATTAGTGAAGGAGCTCTTCAGTTGCAGCCGATCCAGTGTCCAGTGACTAATTACGGCAGATCCTTCCTCTCCGTAGTGGACTCTTTAATGATCTCCCGTCACGAGTCTCCACAGTTCGCACAACTATACTCCTCTTCACATGTGCCTCAGGAGTCAGCCTAGTATCCATGCTGGTGTCTAGAAAAACACACACACACACACACACACACACACACACACACACACACAAAATGATTAAATAGAGACATTTAAATCAAGCTGTAATCAACAACTGGATGATGAATTACTCACCTCTAAACTGTAAGTTGGTGAAGTTCTGCACCGGAACAGTGATTCTAGAGGAGGTGGGAGAATATTAATTGAATCATATCTGAATTTAGTCGGTGTGGTTCATGCTGTTTCTCTTCCTTCCTCACCTGCTTTCTTCTCCTTCGAGTAGCTTCCTGTAGGTGGCAATTTCAATGTCCAGGGCCAGTTTTACATTGAGAAGGTCCTGGTACTCTTGCAAGTGTCTGGCCATCTCTTCCTTCAGCATCTGGATCTCATCCTCCAGACGAGCCACAGTGTCCTGGTAACCGGCCGTCTCTATGGCGAAACGTTCCTCCAGCTCTCGCAGCTGACGCTCCAGGGACTCGTTCTTAAAGACAGTGTGAGATTTGAGAGGATTTTATCCATTATTTCTCTGCAGTCAAGTACTGTGGTCTACAGTGAAATTATTGTTGTTCTTAAGTTTGGTGACAGGTGAAGTGAAATACTTACAGACCCACGAAGAGATTCCAGGTCACAGGTCAGGCCCTGAATCTGCCGACGATACTCATTGGCCTCCTGCTTAGCTTGCCTCAGAGCCTCTCCATTTCGATTGGCTGCATCAGTCAGATCAGCAAACTAATAAAATACATAATACATTTTTTAAGTATCATGACAACTCTTTGAAGATTGTTAGCATTAGCATGGTAATGGATATGACAATGTTAATGTATTTGGTCTTGGCGGAATAGTACAGGAACTTGCTACTGCCAACACATACGCCGATACGCCGCTGCGAGTAAGACACAGTGCTACTGCACAAATAGCAAATATATCATTAACCTGTAGCAGATCTATACAGGTGGAGCTGGGGAAGGTGAAGTGATTTAGAGGAACTCTGAAGCATGCTGCAAACTGCTATAGTGAATGTAATCAGCCATTTAAATGTGTGAGCAACAAGCTCATTGGCTGCAGAAGTGACATTGACCAATCAGCTTGTGCCAAGTAGTTAACGGTATAATTATCATTAGCTTGTGTTAAGACCCACCAGCCTGTGCCATCTAGAGTTTCATGACAGAACTTTGTGTATATATATATATATATATATATATATTGTGAAGAGCAGGGGCTTTGTACTACAACATATTTTTCATGTAGAAACAATTTTCATTCAGAAATTGCAAGTAAATTTCAAAATTAATTACAAAGAAATAAAACATTGAATTGAACATGAAATTTTGAAGAAAGACTGAAAGAGTATTTTCTTGTAAAACACACTCCAATAATCTGTTTTATTCAAAAATAAATTTGATATTCAATTTTTATACAGTGAAGGGTAATTTTATAATATAATTTGTATTGTGTGTATATTTATAATTATTATATTATACTACTTGTTCATGTAACCTTTGAGCGATACCACTCCTCAGTCTCCTGCATATTGGAGGTGGCCATGGCCTCAAACTGAGCTCTGATCTCCTTCAGGGCAGTGGTTAAGTCTGGCTTAGACACATCCAGATCCACATGAACCTGTTGGGCCATCAGCTGCTCCTGCAGCTCCCTCATCTCCTACACAGAGGAATAAAAAGAGTAGAAAGAGTTTCCAGGTGAATATAATGGTTTGGTACAACACAGTGTCAGATCAAATCCGATCTTTACTGTTCATACTGTGATTTTGCAAACGAAGAAATTGTGAAACTGTTCAGTCAAAGTCATCAAAATCCAATATAGCTACAAATAGCCAGATTAAATCAGCAGATATGAGACAGATATGCCAGTTGAAGTAAAATCAAAGAGACAGGGATGAACTGAACAGATGGAGGTAATGAGGAGATAGAGGGAGAGATAACACACCTCCTCATGGACCTTCTTCAGGAAATTGATCTCATCCTGCAGAGCATCAATCTTCCTCTCCAGCTGTACGCGGTTCAGAGCCGCTTCATCCACTTCCTGGAATCAAAAGTGAAATGCATGACAGCAATGCTAACTCTTTCATGATATGTATGAATGAGATGGGAATGGAGTGTTCCTTACTTGTCTGAAGGTGTTAAGGTTATTTTCTGCGTCTTGCCGTAGGGCAGTTTCATCTTGAAGTCTGGAAGACAAATAAAAAACAGTTACTATTACTAAAGCTTTCTCACAACCTAAAAAGGATTCTACCCAAAGTTCAACAAATGACTATAAACACATATTCAAGATTTGTGACCAAAATAACCCCCAGAGACCCAAGTATTGATACTAATGCTGTATTTTCTTATTTTCCCTCTTTCCGCCCCTTTTTCTTTTTTATTTCTAAATATAAATTTTTTTCAAAAGGTTGGGTTCTAGTTATAAAAATCATGTTGTTTATTCACTTTTTTGAAGCTTTCACTTAAGAAGCATTCCCAGCAAGCCATAGGAGTCTGAAATTTGGATATATTTATCTCACAGTGCCAATGACTCACTTATAAAGGCAGTCACTTGTCACCAGCTACTAACATAACAATAACCTGCAGAAAGATTGAATTATTCCTACATGAAAACTGACAGTCTGGAATGGTGCAGACATGGACAAGCGGAATTATACAAACGGTTAAACGTTGAAAAATATATGAAAAATATAAAATATATGAAACTTTAAAGGTATACTACTGTTTAAAAGTTACAGCAAAAATATTTACATTGTTACAGAAAATGTACATTTCAAATAAATGTTACTATGTATTTATTTATTTAAAAAATTACAATAAATTTCAGAAAATCTGCTGAAAATTCAGCTTTGCCATCACAGGAATTAATTACATTTTAAAATATATTCAAATAGAAAATAGTTAGTTGTAC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU311531 lncRNA upstream 3174 3358679 ~ 3358909 (+) True G274579
TU311529 lncRNA upstream 4798 3357070 ~ 3357285 (+) True G274577
TU311485 lncRNA upstream 30953 3326014 ~ 3331130 (+) True G274545
TU311452 lncRNA upstream 59241 3299411 ~ 3302842 (+) True G274512
TU311444 lncRNA upstream 63082 3297337 ~ 3299001 (+) True G274509
TU311507 lncRNA downstream 1814 3370388 ~ 3372020 (+) True G274555
TU311501 lncRNA downstream 6434 3375008 ~ 3376807 (+) True CI01000069_03375220_03376645
TU311545 lncRNA downstream 43654 3412228 ~ 3412472 (+) True G274588
TU311546 lncRNA downstream 43926 3412500 ~ 3412770 (+) True G274589
TU311549 lncRNA downstream 52324 3420898 ~ 3422504 (+) True G274592
CI01000069_03306832_03309710.mRNA mRNA upstream 52373 3306417 ~ 3309710 (+) True CI01000069_03306832_03309710
CI01000069_03293097_03294020.mRNA mRNA upstream 67943 3293030 ~ 3294140 (+) True CI01000069_03293097_03294020
CI01000069_03292108_03292508.mRNA mRNA upstream 69299 3292108 ~ 3292784 (+) True CI01000069_03292108_03292508
CI01000069_03273461_03285388.mRNA mRNA upstream 75740 3273461 ~ 3286343 (+) True CI01000069_03273461_03285388
CI01000069_03250683_03252335.mRNA mRNA upstream 109298 3250683 ~ 3252785 (+) True CI01000069_03250683_03252335
CI01000069_03375220_03376645.mRNA mRNA downstream 6556 3375130 ~ 3376779 (+) False CI01000069_03375220_03376645
CI01000069_03465840_03471086.mRNA mRNA downstream 97266 3465840 ~ 3471867 (+) True CI01000069_03465840_03471086
CI01000069_03479877_03487573.mRNA mRNA downstream 111303 3479877 ~ 3487771 (+) True CI01000069_03479877_03487573
CI01000069_03488885_03492635.mRNA mRNA downstream 120311 3488885 ~ 3492746 (+) True CI01000069_03488885_03492635
CI01000069_03496673_03500800.mRNA mRNA downstream 128099 3496673 ~ 3500895 (+) True CI01000069_03496673_03500800
TU311230 other upstream 467195 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 680925 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 1189890 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 2883002 477727 ~ 479081 (+) True G273359
TU311499 other downstream 244143 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 431449 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 760554 4129128 ~ 4133378 (+) True G274619
TU311605 other downstream 1186735 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 1555893 4924467 ~ 4926687 (+) True G274953

Expression Profile