Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU311507 |
| length | 753 |
| lncRNA type | antisense_over |
| GC content | 0.59 |
| exon number | 2 |
| gene id | G274555 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 3370388 ~ 3372020 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU311505 | lncRNA | upstream | 1814 | 3362083 ~ 3368574 (+) | True | G274553 |
| TU311531 | lncRNA | upstream | 11479 | 3358679 ~ 3358909 (+) | True | G274579 |
| TU311529 | lncRNA | upstream | 13103 | 3357070 ~ 3357285 (+) | True | G274577 |
| TU311485 | lncRNA | upstream | 39258 | 3326014 ~ 3331130 (+) | True | G274545 |
| TU311452 | lncRNA | upstream | 67546 | 3299411 ~ 3302842 (+) | True | G274512 |
| TU311501 | lncRNA | downstream | 2988 | 3375008 ~ 3376807 (+) | True | CI01000069_03375220_03376645 |
| TU311545 | lncRNA | downstream | 40208 | 3412228 ~ 3412472 (+) | True | G274588 |
| TU311546 | lncRNA | downstream | 40480 | 3412500 ~ 3412770 (+) | True | G274589 |
| TU311549 | lncRNA | downstream | 48878 | 3420898 ~ 3422504 (+) | True | G274592 |
| TU311516 | lncRNA | downstream | 80544 | 3452564 ~ 3456210 (+) | True | G274564 |
| CI01000069_03306832_03309710.mRNA | mRNA | upstream | 60678 | 3306417 ~ 3309710 (+) | True | CI01000069_03306832_03309710 |
| CI01000069_03293097_03294020.mRNA | mRNA | upstream | 76248 | 3293030 ~ 3294140 (+) | True | CI01000069_03293097_03294020 |
| CI01000069_03292108_03292508.mRNA | mRNA | upstream | 77604 | 3292108 ~ 3292784 (+) | True | CI01000069_03292108_03292508 |
| CI01000069_03273461_03285388.mRNA | mRNA | upstream | 84045 | 3273461 ~ 3286343 (+) | True | CI01000069_03273461_03285388 |
| CI01000069_03250683_03252335.mRNA | mRNA | upstream | 117603 | 3250683 ~ 3252785 (+) | True | CI01000069_03250683_03252335 |
| CI01000069_03375220_03376645.mRNA | mRNA | downstream | 3110 | 3375130 ~ 3376779 (+) | False | CI01000069_03375220_03376645 |
| CI01000069_03465840_03471086.mRNA | mRNA | downstream | 93820 | 3465840 ~ 3471867 (+) | True | CI01000069_03465840_03471086 |
| CI01000069_03479877_03487573.mRNA | mRNA | downstream | 107857 | 3479877 ~ 3487771 (+) | True | CI01000069_03479877_03487573 |
| CI01000069_03488885_03492635.mRNA | mRNA | downstream | 116865 | 3488885 ~ 3492746 (+) | True | CI01000069_03488885_03492635 |
| CI01000069_03496673_03500800.mRNA | mRNA | downstream | 124653 | 3496673 ~ 3500895 (+) | True | CI01000069_03496673_03500800 |
| TU311230 | other | upstream | 475500 | 2892846 ~ 2892971 (+) | True | G274314 |
| TU311181 | other | upstream | 689230 | 2672624 ~ 2681158 (+) | True | G274270 |
| TU311015 | other | upstream | 1198195 | 2112843 ~ 2172193 (+) | True | G274124 |
| TU310194 | other | upstream | 2891307 | 477727 ~ 479081 (+) | True | G273359 |
| TU311499 | other | downstream | 240697 | 3636100 ~ 3638430 (+) | True | CI01000069_03636156_03639756 |
| TU311564 | other | downstream | 428003 | 3800023 ~ 3803501 (+) | True | G274603 |
| TU311582 | other | downstream | 757108 | 4129128 ~ 4133378 (+) | True | G274619 |
| TU311605 | other | downstream | 1183289 | 4555309 ~ 4558480 (+) | True | CI01000069_04556116_04558002 |
| TU311947 | other | downstream | 1552447 | 4924467 ~ 4926687 (+) | True | G274953 |
