RNA id: TU312922


Basic Information

Item Value
RNA id TU312922
length 378
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G275826
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3607452 ~ 3614839 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCAGCCAAAATGTTTATTCATCAAATTCACAAGGTTAGAACAGTGTACATTCAACAGTAAAGGCCTGATGACTACTTAAAAATCAAGACTATATTTTATTATATGACATTTACTAGATGTAACCATATAACAAAAAACAAGCTTGATGATTTCTTCACGTAAGATGATCTTAGAGCTGCATTTAGCTTTCCAGGGTGTGCTTGTCAAACAGGTACTCCGCCATCCTGTTGTTGCCAGCATCCATCTTGGAAAGGTTGGTGATGTGGTCACCAAGCTTCTTGATGGCCTCAACCTGCTCATTCAGGTAGTGAGTCTCCAGAAAGTCACACAGCTGTTGGACAAGACATCAGAAAATAATTTAGAATGCAAACTTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312974 lncRNA downstream 246751 3360488 ~ 3360701 (-) True G275878
TU312972 lncRNA downstream 250031 3357221 ~ 3357421 (-) True G275876
TU312868 lncRNA downstream 294556 3306489 ~ 3312896 (-) True G275772
TU312910 lncRNA downstream 323261 3280912 ~ 3284191 (-) True G275814
TU312952 lncRNA downstream 345948 3261296 ~ 3261504 (-) True G275856
TU313017 lncRNA upstream 121815 3736654 ~ 3736958 (-) True G275920
TU313018 lncRNA upstream 122633 3737472 ~ 3737689 (-) True G275921
TU312852 lncRNA upstream 176750 3791589 ~ 3796952 (-) True G275756
TU312886 lncRNA upstream 208553 3823392 ~ 3826580 (-) True G275790
TU312869 lncRNA upstream 224395 3839234 ~ 3843586 (-) True G275773
CI01000069_03578433_03584741.mRNA mRNA downstream 22221 3578433 ~ 3585231 (-) True CI01000069_03578433_03584741
CI01000069_03571631_03573352.mRNA mRNA downstream 31709 3571535 ~ 3575743 (-) False CI01000069_03571631_03573352
CI01000069_03565665_03568486.mRNA mRNA downstream 38966 3565540 ~ 3568486 (-) True CI01000069_03565665_03568486
CI01000069_03506556_03507031.mRNA mRNA downstream 99895 3506255 ~ 3507557 (-) True CI01000069_03506556_03507031
CI01000069_03474790_03478425.mRNA mRNA downstream 129027 3474790 ~ 3478425 (-) True CI01000069_03474790_03478425
CI01000069_03667639_03669979.mRNA mRNA upstream 52781 3667620 ~ 3669979 (-) True CI01000069_03667639_03669979
CI01000069_03670799_03677837.mRNA mRNA upstream 55432 3670271 ~ 3677843 (-) True CI01000069_03670799_03677837
CI01000069_03678617_03697993.mRNA mRNA upstream 63459 3678298 ~ 3698756 (-) True CI01000069_03678617_03697993
CI01000069_03721128_03722393.mRNA mRNA upstream 106105 3720944 ~ 3722393 (-) True CI01000069_03721128_03722393
CI01000069_03739653_03764284.mRNA mRNA upstream 123611 3738450 ~ 3764284 (-) True CI01000069_03739653_03764284
TU312899 other downstream 31117 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 181078 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 529284 2992504 ~ 3078168 (-) True G275699
TU312760 other downstream 607019 2989026 ~ 2991817 (-) True G275668
TU312711 other downstream 977136 2621752 ~ 2630316 (-) True G275624
TU312875 other upstream 150834 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312842 other upstream 189777 3805663 ~ 3805758 (-) True G275746
TU313201 other upstream 1324682 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 1354456 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile