RNA id: TU311678


Basic Information

Item Value
RNA id TU311678
length 269
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G274715
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3737265 ~ 3737533 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGACTGACGTCACTGCCATTACACGATAGGCTGAGAGATTAAGTTAGCCGTTACGCTTTCTCCAACGGTAAGAGATACAGACCCTCTCATCTCCCTATAATATACAATCTCTGGTTATAATTTCTCTAATTTCCAGGTCAAGGTGCTGTGCATTGTGGTAATTGATGCGACATGACGTCACTTCCAAAGGACCAATGAACATATCTGACCAATTTCATGGAATGTGAAAACTAATCTCATTGGCTGAATAAATAACATTTAAATTAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311614 lncRNA upstream 5682 3728882 ~ 3731583 (+) True G274651
TU311561 lncRNA upstream 78830 3658230 ~ 3658435 (+) True G274601
TU311516 lncRNA upstream 281055 3452564 ~ 3456210 (+) True G274564
TU311549 lncRNA upstream 314761 3420898 ~ 3422504 (+) True G274592
TU311546 lncRNA upstream 324495 3412500 ~ 3412770 (+) True G274589
TU311679 lncRNA downstream 23368 3760901 ~ 3761638 (+) True G274716
TU311685 lncRNA downstream 35561 3773094 ~ 3773544 (+) True G274721
TU311591 lncRNA downstream 53973 3791506 ~ 3796972 (+) True G274628
TU311698 lncRNA downstream 60035 3797568 ~ 3797875 (+) True G274731
TU311700 lncRNA downstream 67083 3804616 ~ 3807059 (+) True G274733
CI01000069_03643296_03647762.mRNA mRNA upstream 89479 3643155 ~ 3647786 (+) True CI01000069_03643296_03647762
CI01000069_03636156_03639756.mRNA mRNA upstream 97280 3635980 ~ 3639985 (+) False CI01000069_03636156_03639756
CI01000069_03631837_03632897.mRNA mRNA upstream 104302 3631837 ~ 3632963 (+) True CI01000069_03631837_03632897
CI01000069_03625937_03626925.mRNA mRNA upstream 110104 3625937 ~ 3627161 (+) True CI01000069_03625937_03626925
CI01000069_03612923_03614657.mRNA mRNA upstream 122526 3612747 ~ 3614739 (+) False CI01000069_03612923_03614657
CI01000069_03766564_03767936.mRNA mRNA downstream 29031 3766564 ~ 3768198 (+) True CI01000069_03766564_03767936
CI01000069_03812664_03832205.mRNA mRNA downstream 75131 3812664 ~ 3832279 (+) True CI01000069_03812664_03832205
CI01000069_03835903_03837843.mRNA mRNA downstream 98370 3835903 ~ 3838319 (+) True CI01000069_03835903_03837843
CI01000069_03839830_03843013.mRNA mRNA downstream 102297 3839830 ~ 3843569 (+) True CI01000069_03839830_03843013
CI01000069_03845642_03851052.mRNA mRNA downstream 108109 3845642 ~ 3851213 (+) True CI01000069_03845642_03851052
TU311499 other upstream 98835 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 842377 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1056107 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 1565072 2112843 ~ 2172193 (+) True G274124
TU310194 other upstream 3258184 477727 ~ 479081 (+) True G273359
TU311564 other downstream 62490 3800023 ~ 3803501 (+) True G274603
TU311582 other downstream 391595 4129128 ~ 4133378 (+) True G274619
TU311605 other downstream 817776 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 1186934 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 1308694 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile