RNA id: TU311715


Basic Information

Item Value
RNA id TU311715
length 284
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G274746
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3922288 ~ 3922571 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAAATTAAGATATTTTTAATGAGATCCGATGGCTCAGTGAGGCCTCCATTGAGAGCAAAACCGCTGAAACTCTCAAGGTCCATAAAGGTACTAAAAACATATTTAAAACAGTTCATGTGAGTTCAGTGGTTCTACCTTAATATTATAAAGCGACAAGAATACTTTTTTCAACAATATATAGTGATGGGTCGATTTCAAAACACTGCTTCAGAGCTTTACGAATCGAATCAGTGAATCGGAGCGCCAAAGTCACATGATTTCAACAGTTTTGATAGGAGATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311711 lncRNA upstream 38531 3883537 ~ 3883757 (+) True G274743
TU311705 lncRNA upstream 48308 3873776 ~ 3873980 (+) True G274737
TU311700 lncRNA upstream 115229 3804616 ~ 3807059 (+) True G274733
TU311698 lncRNA upstream 124413 3797568 ~ 3797875 (+) True G274731
TU311591 lncRNA upstream 125316 3791506 ~ 3796972 (+) True G274628
TU311717 lncRNA downstream 9497 3932068 ~ 3932404 (+) True G274748
TU311738 lncRNA downstream 76412 3998983 ~ 4002223 (+) True G274760
TU311634 lncRNA downstream 216559 4139130 ~ 4140762 (+) True G274671
TU311622 lncRNA downstream 218309 4140880 ~ 4141167 (+) True G274659
TU311632 lncRNA downstream 261631 4184202 ~ 4192064 (+) True G274669
CI01000069_03902139_03920099.mRNA mRNA upstream 1989 3902139 ~ 3920299 (+) True CI01000069_03902139_03920099
CI01000069_03886826_03898833.mRNA mRNA upstream 23263 3886826 ~ 3899025 (+) True CI01000069_03886826_03898833
CI01000069_03854857_03870627.mRNA mRNA upstream 51355 3854857 ~ 3870933 (+) True CI01000069_03854857_03870627
CI01000069_03845642_03851052.mRNA mRNA upstream 71075 3845642 ~ 3851213 (+) True CI01000069_03845642_03851052
CI01000069_03839830_03843013.mRNA mRNA upstream 78719 3839830 ~ 3843569 (+) True CI01000069_03839830_03843013
CI01000069_03927870_03929948.mRNA mRNA downstream 5299 3927870 ~ 3930379 (+) True CI01000069_03927870_03929948
CI01000069_03935114_03939004.mRNA mRNA downstream 11737 3934308 ~ 3939158 (+) True CI01000069_03935114_03939004
CI01000069_03953485_03961584.mRNA mRNA downstream 30773 3953344 ~ 3961836 (+) True CI01000069_03953485_03961584
CI01000069_03965213_03971865.mRNA mRNA downstream 42541 3965112 ~ 3972048 (+) True CI01000069_03965213_03971865
CI01000069_03991989_03994139.mRNA mRNA downstream 69107 3991678 ~ 3994317 (+) True CI01000069_03991989_03994139
TU311564 other upstream 118787 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 283858 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1027400 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1241130 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 1750095 2112843 ~ 2172193 (+) True G274124
TU311582 other downstream 206557 4129128 ~ 4133378 (+) True G274619
TU311605 other downstream 632738 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 1001896 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 1123656 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile