Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU311634 |
| length | 1633 |
| lncRNA type | antisense_over |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G274671 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 4139130 ~ 4140762 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU311738 | lncRNA | upstream | 136907 | 3998983 ~ 4002223 (+) | True | G274760 |
| TU311717 | lncRNA | upstream | 206726 | 3932068 ~ 3932404 (+) | True | G274748 |
| TU311715 | lncRNA | upstream | 216559 | 3922288 ~ 3922571 (+) | True | G274746 |
| TU311711 | lncRNA | upstream | 255373 | 3883537 ~ 3883757 (+) | True | G274743 |
| TU311705 | lncRNA | upstream | 265150 | 3873776 ~ 3873980 (+) | True | G274737 |
| TU311622 | lncRNA | downstream | 118 | 4140880 ~ 4141167 (+) | True | G274659 |
| TU311632 | lncRNA | downstream | 43440 | 4184202 ~ 4192064 (+) | True | G274669 |
| TU311616 | lncRNA | downstream | 80660 | 4221422 ~ 4370572 (+) | True | G274653 |
| TU311755 | lncRNA | downstream | 116682 | 4257444 ~ 4306259 (+) | True | G274775 |
| TU311759 | lncRNA | downstream | 127453 | 4268215 ~ 4268822 (+) | True | G274779 |
| CI01000069_04113962_04124908.mRNA | mRNA | upstream | 13923 | 4113081 ~ 4125207 (+) | True | CI01000069_04113962_04124908 |
| CI01000069_04089580_04103908.mRNA | mRNA | upstream | 34471 | 4089580 ~ 4104659 (+) | True | CI01000069_04089580_04103908 |
| CI01000069_04055396_04078361.mRNA | mRNA | upstream | 60390 | 4055396 ~ 4078740 (+) | True | CI01000069_04055396_04078361 |
| CI01000069_04047810_04052352.mRNA | mRNA | upstream | 86484 | 4047576 ~ 4052646 (+) | True | CI01000069_04047810_04052352 |
| CI01000069_04042802_04047285.mRNA | mRNA | upstream | 91773 | 4042802 ~ 4047357 (+) | True | CI01000069_04042802_04047285 |
| CI01000069_04143761_04147538.mRNA | mRNA | downstream | 2999 | 4143761 ~ 4147679 (+) | True | CI01000069_04143761_04147538 |
| CI01000069_04151875_04159107.mRNA | mRNA | downstream | 11113 | 4151875 ~ 4159191 (+) | True | CI01000069_04151875_04159107 |
| CI01000069_04165021_04170544.mRNA | mRNA | downstream | 23366 | 4164128 ~ 4170555 (+) | True | CI01000069_04165021_04170544 |
| CI01000069_04203202_04214241.mRNA | mRNA | downstream | 62440 | 4203202 ~ 4214325 (+) | True | CI01000069_04203202_04214241 |
| CI01000069_04230190_04235064.mRNA | mRNA | downstream | 88607 | 4229369 ~ 4235081 (+) | True | CI01000069_04230190_04235064 |
| TU311582 | other | upstream | 5752 | 4129128 ~ 4133378 (+) | True | G274619 |
| TU311564 | other | upstream | 335629 | 3800023 ~ 3803501 (+) | True | G274603 |
| TU311499 | other | upstream | 500700 | 3636100 ~ 3638430 (+) | True | CI01000069_03636156_03639756 |
| TU311230 | other | upstream | 1244242 | 2892846 ~ 2892971 (+) | True | G274314 |
| TU311181 | other | upstream | 1457972 | 2672624 ~ 2681158 (+) | True | G274270 |
| TU311605 | other | downstream | 414547 | 4555309 ~ 4558480 (+) | True | CI01000069_04556116_04558002 |
| TU311947 | other | downstream | 783705 | 4924467 ~ 4926687 (+) | True | G274953 |
| TU312063 | other | downstream | 905465 | 5046227 ~ 5048990 (+) | True | CI01000069_05046565_05048523 |
