RNA id: TU312866



Basic Information


Item Value
RNA id TU312866
length 1808
lncRNA type read_through
GC content 0.40
exon number 6
gene id G275770
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4143168 ~ 4215690 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTACAGACAGATGTGTACATTAGATGCAGAGACACTATGAGTACTCCATTCAGGCATCAAACACAGAGTGAGGCACATCTGTCTCCACTGATTATGCTTTACAATCACATGATCCAAACAATTTCACCCAGAATCTCTACTGATCGCTGCAACCACCAGGACCAACTACAGCTTTCCTAAGGAATGTGCTAAAACATATAGATAAACCCTAGTTCTAGAAAAACAAAAAGGCGATTGTTCAGTTAAATTACGGATGTACCACTTGTGAGAGCAAATCAGGAGATACTCAGTGATTTATAGGGAATGCTTTCCACTCTCTAGACAGTAGGTAGTTTCAAAATCTCCCATTGAAGAAAAGTGCTGAGATAAATTCTTCATCACACTAAATACAAGAGCTATTTAATTATCAAAATATATATATATAATTTGCATGATTCGATTTTGTTTTGGAATGAACAGTAGGCTGTTGTTGTTGATGTTTTGTCTCGCACTATGATGTGTCTCAACGTTTAAAATTGGAGTTAAATATGACATGATTGCCTTTGCGGTCTTTAACCATTTAAAGCATAAATTAAAACACTCTACACTGCCCATTTCAGTCCATTTAACCATTCAAATGCATTGCTAATTCAAGCCATGACGTTTTTCAGATAGTTAAATGGCAATGCATTCACAAAGTGCAGTATGTGCCCTATTTCATGGACCTTTTAGAAATTAATCAATGGTCTTCAAAATAATGATAATAATTTCCATATGTATTATAAGCAATAACAGCTCAAAATTACTAAAAAACCAAAAAAAAAAAAAAAAAAAAACATTCTCATCCCATCACTGACCTATGTTGTTGTCTTTATCCTCATCTTTTTCCGCACCATGCCTCTCATCAAACTCATCAGCGAACATGTCTAGCTCTTCTTCTTCCTCTTTTCTTTCCTCAAGCGTTTTGGCTGCCTTTCCTGGAGTCAACCCCTTCAGCTTGTAGGCCAGTTTTTCATATGTCTGCTGATAAATTTCAAATTCTCCAATCCCCACCAATCTATCTGCCAACGCTGTCAGTTTGTCTAGTTTATCAGCATCTCTGTTAAAAGTCTCTTTTTTCTCCTCCTCTTCTCCTCTCAGTTTCCCTTTCTTCTTCTGTCCCCCAAGACCGCCAAGTCTTCTCAGAGCAGCAGCCACTGTTTCTCCAGGCAGCAGCAGCTGAATGATGGCTTCTGTGAGTTGATGATGACTGTATGTAGCCAGAGGGTCTTCTGCTGGCTCTTTCTCCTCCTCTTCCTCATCATCTTCACTGTCTTTCTGCTGCTGCTCTCGTTTTATCTCCTCCTCTGCTTCATCTTCATCACCAACCCTTCTCTTACGCTTCGCTGCAAGGCCTTTCTTCTTTTTCACAGGTTGCTCTTTTATCTTCACCCAGTCAATATTGTCCAGCCAGTTGTCCCTGATATCTTTCTCTTTGTTGACAAAATAGTTTCCCTCTGAATCAAAGTGACCCTCCTGCATTTCCTCGTCGAGGTTAAAAGGGGTGATGCGTACCCCCTCGTCATAGTCAATGGTTGCCGTTTCCTGACCTTCCACATCGTCATTGGAAAGGATGTCATATTTGCTGATATTTTCTCCATCCCCTGCTTCATCTTCCTCATCACTGTCCAAAGAGTGTTTCTCCTTAAATCTGGATCCTGGGCCACTCACACCATCAACAATCTTTTTCTTTGGAACATCTTCCAAAGTAATCTCCCCATCTCCATCCTCAAAAGTCACTTTCCTTTTCGACATGCTGGATGTTATTCTACCCGCTGCGCCATTTAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313091 lncRNA downstream 7768 4135088 ~ 4135400 (-) True G275992
TU313081 lncRNA downstream 54810 4087961 ~ 4088358 (-) True G275982
TU313080 lncRNA downstream 55423 4087379 ~ 4087745 (-) True G275981
TU313079 lncRNA downstream 56030 4086835 ~ 4087138 (-) True G275980
TU313078 lncRNA downstream 57440 4084839 ~ 4085728 (-) True G275979
TU313149 lncRNA upstream 311392 4527082 ~ 4527880 (-) True G276042
TU313159 lncRNA upstream 339519 4555209 ~ 4557664 (-) True G276052
TU313177 lncRNA upstream 398164 4613854 ~ 4617428 (-) False G276064
TU313179 lncRNA upstream 398164 4613854 ~ 4621254 (-) False G276064
TU313181 lncRNA upstream 401239 4616929 ~ 4623737 (-) False G276064
CI01000069_04140312_04141990.mRNA mRNA downstream 324 4139614 ~ 4142844 (-) True CI01000069_04140312_04141990
CI01000069_04129986_04133876.mRNA mRNA downstream 9245 4129725 ~ 4133923 (-) True CI01000069_04129986_04133876
CI01000069_03986480_03988243.mRNA mRNA downstream 154556 3985177 ~ 3988612 (-) True CI01000069_03986480_03988243
CI01000069_03972492_03982847.mRNA mRNA downstream 160211 3972090 ~ 3982957 (-) True CI01000069_03972492_03982847
CI01000069_03939251_03942780.mRNA mRNA downstream 200073 3939204 ~ 3943095 (-) True CI01000069_03939251_03942780
CI01000069_04217948_04222207.mRNA mRNA upstream 1004 4216694 ~ 4222207 (-) True CI01000069_04217948_04222207
CI01000069_04241400_04252572.mRNA mRNA upstream 25710 4241400 ~ 4255532 (-) True CI01000069_04241400_04252572
CI01000069_04265905_04279103.mRNA mRNA upstream 49945 4265635 ~ 4279171 (-) True CI01000069_04265905_04279103
CI01000069_04298346_04340021.mRNA mRNA upstream 82284 4297974 ~ 4340481 (-) True CI01000069_04298346_04340021
CI01000069_04350619_04363291.mRNA mRNA upstream 134762 4350452 ~ 4363682 (-) True CI01000069_04350619_04363291
TU312842 other downstream 336091 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 373948 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 566833 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 716794 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 1065000 2992504 ~ 3078168 (-) True G275699
TU313201 other upstream 723831 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 753605 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile