RNA id: TU311761


Basic Information

Item Value
RNA id TU311761
length 282
lncRNA type intronic
GC content 0.38
exon number 2
gene id G274781
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4270216 ~ 4272592 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCACAACAGCTGCAGACCCGCAGCACCAGCAGTTTCAGAACCGCAGCCACAGAGCGGAAGTGAGGGGCGGGGCTTAACAGTCATATGTGCGCTACCCATACATGTTATTTTCTTTTGTTAAATATAAGTTGTTTTTACATGGATTTTGATCGGATCGATGTCTACAATATTTAACAACAATACTTTTAAATAAAGTCACTTTTCTGTTCATATAATATGCATAAGATATCATGATGTACAAAGAGCAACATTTTAAAACAGCCTATTGGTCATGCTTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311759 lncRNA upstream 1394 4268215 ~ 4268822 (+) True G274779
TU311632 lncRNA upstream 78152 4184202 ~ 4192064 (+) True G274669
TU311622 lncRNA upstream 129049 4140880 ~ 4141167 (+) True G274659
TU311634 lncRNA upstream 129454 4139130 ~ 4140762 (+) True G274671
TU311738 lncRNA upstream 267993 3998983 ~ 4002223 (+) True G274760
TU311649 lncRNA downstream 148537 4421129 ~ 4422342 (+) True CI01000069_04412903_04419976
TU311804 lncRNA downstream 155498 4428090 ~ 4428396 (+) True G274823
TU311805 lncRNA downstream 156056 4428648 ~ 4429418 (+) True G274824
TU311806 lncRNA downstream 158422 4431014 ~ 4433247 (+) True G274825
TU311807 lncRNA downstream 161146 4433738 ~ 4433938 (+) True G274826
CI01000069_04230190_04235064.mRNA mRNA upstream 35135 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
CI01000069_04203202_04214241.mRNA mRNA upstream 55891 4203202 ~ 4214325 (+) True CI01000069_04203202_04214241
CI01000069_04165021_04170544.mRNA mRNA upstream 99661 4164128 ~ 4170555 (+) True CI01000069_04165021_04170544
CI01000069_04151875_04159107.mRNA mRNA upstream 111025 4151875 ~ 4159191 (+) True CI01000069_04151875_04159107
CI01000069_04143761_04147538.mRNA mRNA upstream 122537 4143761 ~ 4147679 (+) True CI01000069_04143761_04147538
CI01000069_04412903_04419976.mRNA mRNA downstream 138643 4411235 ~ 4421188 (+) False CI01000069_04412903_04419976
CI01000069_04425809_04438936.mRNA mRNA downstream 151351 4423943 ~ 4438992 (+) False CI01000069_04425809_04438936
CI01000069_04527086_04527715.mRNA mRNA downstream 254409 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04556116_04558002.mRNA mRNA downstream 282677 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04562461_04568806.mRNA mRNA downstream 289869 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
TU311582 other upstream 136838 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 466715 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 631786 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1375328 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1589058 2672624 ~ 2681158 (+) True G274270
TU311605 other downstream 282717 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 651875 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 773635 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile