RNA id: TU311804


Basic Information

Item Value
RNA id TU311804
length 307
lncRNA type intronic
GC content 0.36
exon number 1
gene id G274823
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4428090 ~ 4428396 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGTGGAATGACGTGAGGGTGAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAACTCTGTAATGTGATGTATTTTAAACAGGACATTCAACTGGACTGTGAAAAGAGGCCGTTACATACCAGAATAAAGGAAGACTGAATGATAGTTTGCTAAAACAATGCCTAAATAGCTATTTGGCTATTGGTTAACTTTGGGTTTATAGGTTTTCAAACCTCTGGTCTGCAAGAGAGTGATAGGGTAGTCTGTGGAAAAATAGAGGAAAAATAATGTAAATGTGTAAGGATGAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311649 lncRNA upstream 5748 4421129 ~ 4422342 (+) True CI01000069_04412903_04419976
TU311616 lncRNA upstream 57518 4221422 ~ 4370572 (+) True G274653
TU311755 lncRNA upstream 121831 4257444 ~ 4306259 (+) True G274775
TU311761 lncRNA upstream 155498 4270216 ~ 4272592 (+) True G274781
TU311759 lncRNA upstream 159268 4268215 ~ 4268822 (+) True G274779
TU311805 lncRNA downstream 252 4428648 ~ 4429418 (+) True G274824
TU311806 lncRNA downstream 2618 4431014 ~ 4433247 (+) True G274825
TU311807 lncRNA downstream 5342 4433738 ~ 4433938 (+) True G274826
TU311808 lncRNA downstream 5678 4434074 ~ 4434668 (+) True G274827
TU311809 lncRNA downstream 6768 4435164 ~ 4436147 (+) True G274828
CI01000069_04412903_04419976.mRNA mRNA upstream 6902 4411235 ~ 4421188 (+) False CI01000069_04412903_04419976
CI01000069_04230190_04235064.mRNA mRNA upstream 193009 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
CI01000069_04203202_04214241.mRNA mRNA upstream 213765 4203202 ~ 4214325 (+) True CI01000069_04203202_04214241
CI01000069_04165021_04170544.mRNA mRNA upstream 257535 4164128 ~ 4170555 (+) True CI01000069_04165021_04170544
CI01000069_04151875_04159107.mRNA mRNA upstream 268899 4151875 ~ 4159191 (+) True CI01000069_04151875_04159107
CI01000069_04527086_04527715.mRNA mRNA downstream 98605 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04556116_04558002.mRNA mRNA downstream 126873 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04562461_04568806.mRNA mRNA downstream 134065 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04612170_04623197.mRNA mRNA downstream 183774 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04773976_04774606.mRNA mRNA downstream 345580 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
TU311582 other upstream 294712 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 624589 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 789660 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1533202 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1746932 2672624 ~ 2681158 (+) True G274270
TU311605 other downstream 126913 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 496071 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 617831 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile