RNA id: TU311809


Basic Information

Item Value
RNA id TU311809
length 984
lncRNA type intronic
GC content 0.41
exon number 1
gene id G274828
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4435164 ~ 4436147 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTAAATAGTGCATAAAGTATCAGCAATCGCATCATTTGGCCATAACACAAAGCGATCATCATATCAGTCAAAATGTTTATATTGGTACATTATTAATTTGCAACTAAAACATGATAATGCTACAAGGGTACTATGTTTTTCCATGTTCTTGTAACGGCATATTTTGTGTGATTGATGCCTCTGTTAAGGCTTAGTGGTGTTTAAAATTGCATTAAATACACTCCTGCAATCTCACTAAAAGAAAAAAACAAGTCCCACTCGCACACACATACACACCACACAAACAATGCAGCGATTGAGAGATACAAAAATATTCCATGCTTCAGCAAAAAATAAAGCACAGCATAGAAGGTATCATGCTGCTTTCCACCGCCCCTTTCTGTTGCCTTCTTTCCTCTCTTCACTTTCTCTGTAAGTACACATATCTCAGGATGGGGTCTGGAGATTTATGAGCTATAGTGAGAAGTGGGCCAGAAAGCCCTCCCCGGCTCTGGATCTGCTTTGCCGCCTCCCTCACGTCTTTTATTTCCATCCCTCCCTCTCTGGTTGCAGCGCTTTCTGCTCACATTACCCTCTGTTGAGTGATAAACATTGTCTGTGGGCAGTAAATTCAGTCTGAGCCTGACAGGCCTCCAATAAACCAGTCTATTCTCTCACTGTGAGGAGGCTTTGGTCTGGAGGCCCACAGGAAGGGAATGCAGACACACACACACACACACATACACACACTCACAAACTAACATACACGCAGATATAAAGATAAACAAGTTAAGAGGGACAAGATACATGTGGCATACATCATGCACATCAAAGGCACAAATAAGGAACAAACACAAGAGACACATTCATATGCACTCGCACAAAGAAACAATGATCAACATGCGTCTGACTAAAACTCGCTAGCCGGATTTACACAACCAACGAACAAAAGCTTAGAAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311808 lncRNA upstream 496 4434074 ~ 4434668 (+) True G274827
TU311807 lncRNA upstream 1226 4433738 ~ 4433938 (+) True G274826
TU311806 lncRNA upstream 1917 4431014 ~ 4433247 (+) True G274825
TU311805 lncRNA upstream 5746 4428648 ~ 4429418 (+) True G274824
TU311804 lncRNA upstream 6768 4428090 ~ 4428396 (+) True G274823
TU311810 lncRNA downstream 2418 4438565 ~ 4438847 (+) False CI01000069_04425809_04438936
TU311811 lncRNA downstream 2767 4438914 ~ 4439161 (+) True CI01000069_04425809_04438936
TU311812 lncRNA downstream 3173 4439320 ~ 4439744 (+) True G274831
TU311813 lncRNA downstream 3664 4439811 ~ 4440019 (+) True G274832
TU311814 lncRNA downstream 4520 4440667 ~ 4440947 (+) True G274833
CI01000069_04412903_04419976.mRNA mRNA upstream 13976 4411235 ~ 4421188 (+) False CI01000069_04412903_04419976
CI01000069_04230190_04235064.mRNA mRNA upstream 200083 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
CI01000069_04203202_04214241.mRNA mRNA upstream 220839 4203202 ~ 4214325 (+) True CI01000069_04203202_04214241
CI01000069_04165021_04170544.mRNA mRNA upstream 264609 4164128 ~ 4170555 (+) True CI01000069_04165021_04170544
CI01000069_04151875_04159107.mRNA mRNA upstream 275973 4151875 ~ 4159191 (+) True CI01000069_04151875_04159107
CI01000069_04527086_04527715.mRNA mRNA downstream 90854 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04556116_04558002.mRNA mRNA downstream 119122 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04562461_04568806.mRNA mRNA downstream 126314 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04612170_04623197.mRNA mRNA downstream 176023 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04773976_04774606.mRNA mRNA downstream 337829 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
TU311582 other upstream 301786 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 631663 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 796734 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1540276 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1754006 2672624 ~ 2681158 (+) True G274270
TU311605 other downstream 119162 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 488320 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 610080 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile