RNA id: TU311822


Basic Information

Item Value
RNA id TU311822
length 221
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G274841
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4455063 ~ 4455283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACCACCTTCTGTATTCAAATTACGGAAGGCGTAGGACGTAGCATAAGCTTTTTGAACTGCAAGAGTTTTACACTTTCTTTGTACATTGAATACGGAAGGTGGTCTGGCGGAAGCTATATTTTACTTTATAACTTGTTAAATACGGACCGCTTTGCTTCAGAAGGCCTTTATTAACCCCCCGGAGCCGTGTGGAATATATTTATGATGGATGGATGTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311821 lncRNA upstream 696 4453983 ~ 4454367 (+) True G274840
TU311820 lncRNA upstream 1766 4453021 ~ 4453297 (+) True G274839
TU311610 lncRNA upstream 2954 4451428 ~ 4452109 (+) True G274647
TU311819 lncRNA upstream 5357 4449490 ~ 4449706 (+) True G274838
TU311818 lncRNA upstream 6002 4448172 ~ 4449061 (+) True G274837
TU311823 lncRNA downstream 291 4455574 ~ 4455928 (+) True G274842
TU311824 lncRNA downstream 1591 4456874 ~ 4457505 (+) True G274843
TU311825 lncRNA downstream 2679 4457962 ~ 4458256 (+) True G274844
TU311826 lncRNA downstream 3131 4458414 ~ 4458654 (+) True G274845
TU311827 lncRNA downstream 3729 4459012 ~ 4459391 (+) True G274846
CI01000069_04425809_04438936.mRNA mRNA upstream 16071 4423943 ~ 4438992 (+) False CI01000069_04425809_04438936
CI01000069_04412903_04419976.mRNA mRNA upstream 33875 4411235 ~ 4421188 (+) False CI01000069_04412903_04419976
CI01000069_04230190_04235064.mRNA mRNA upstream 219982 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
CI01000069_04203202_04214241.mRNA mRNA upstream 240738 4203202 ~ 4214325 (+) True CI01000069_04203202_04214241
CI01000069_04165021_04170544.mRNA mRNA upstream 284508 4164128 ~ 4170555 (+) True CI01000069_04165021_04170544
CI01000069_04527086_04527715.mRNA mRNA downstream 71718 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04556116_04558002.mRNA mRNA downstream 99986 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04562461_04568806.mRNA mRNA downstream 107178 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04612170_04623197.mRNA mRNA downstream 156887 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04773976_04774606.mRNA mRNA downstream 318693 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
TU311582 other upstream 321685 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 651562 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 816633 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1560175 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1773905 2672624 ~ 2681158 (+) True G274270
TU311605 other downstream 100026 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 469184 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 590944 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile