RNA id: TU311824



Basic Information


Item Value
RNA id TU311824
length 632
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G274843
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4456874 ~ 4457505 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGAGACGATATTTGAATGACAACAGGGGATAGAAATGGCATATCTTGAGGCAATGATGAGAAAACAGAGCCTGAGTCTGTGTGTGAGACAACAGAGGATCTGGCAGACTGAGGGAAATGTGCAATAACAAAAGTTCAAGGTTCGTGGCCTAAGATTCAGGAACCTTGACCTTTGCTATTTCAGCATAACTGGGAGAGACATGTGGACCTACTTTAGGAGCTCACAAACACACACACATGCACGCACAAACATTTCAACACACACACACTTCAGTGTTTCCCTTTCACTTTTCAAAGTTGCCTGTGGCATTGGTCCATGTCTCACATATTTGCACTAATGAATGACTTAAATGTCAGAGTCAGTGAAAGCAACATTCAGCAACATTGGTAAAGACTGCAACTGTCAACAGTATTTATTGTACATTATCATGCCAAACTATAACCCTGCAACAGAATTAACCAGGAAAAATACATTCACTGTGCAAAGTGAAGCAGATCTATAGTTTGCATTTTATTTCAAGTCGACCTAAAACATGTCCAAAATTGTAATATTGTGGTATAATTAATTAATTTATATTTAGAAGAGCTGTTTTCTATTTTATTAATATTTAAAACAGTTGTGGTGCTTAATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU311823 lncRNA upstream 946 4455574 ~ 4455928 (+) True G274842
TU311822 lncRNA upstream 1591 4455063 ~ 4455283 (+) True G274841
TU311821 lncRNA upstream 2507 4453983 ~ 4454367 (+) True G274840
TU311820 lncRNA upstream 3577 4453021 ~ 4453297 (+) True G274839
TU311610 lncRNA upstream 4765 4451428 ~ 4452109 (+) True G274647
TU311825 lncRNA downstream 457 4457962 ~ 4458256 (+) True G274844
TU311826 lncRNA downstream 909 4458414 ~ 4458654 (+) True G274845
TU311827 lncRNA downstream 1507 4459012 ~ 4459391 (+) True G274846
TU311828 lncRNA downstream 3083 4460588 ~ 4461607 (+) True G274847
TU311829 lncRNA downstream 4661 4462166 ~ 4463044 (+) True G274848
CI01000069_04425809_04438936.mRNA mRNA upstream 17882 4423943 ~ 4438992 (+) False CI01000069_04425809_04438936
CI01000069_04412903_04419976.mRNA mRNA upstream 35686 4411235 ~ 4421188 (+) False CI01000069_04412903_04419976
CI01000069_04230190_04235064.mRNA mRNA upstream 221793 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
CI01000069_04203202_04214241.mRNA mRNA upstream 242549 4203202 ~ 4214325 (+) True CI01000069_04203202_04214241
CI01000069_04165021_04170544.mRNA mRNA upstream 286319 4164128 ~ 4170555 (+) True CI01000069_04165021_04170544
CI01000069_04527086_04527715.mRNA mRNA downstream 69496 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04556116_04558002.mRNA mRNA downstream 97764 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04562461_04568806.mRNA mRNA downstream 104956 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04612170_04623197.mRNA mRNA downstream 154665 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04773976_04774606.mRNA mRNA downstream 316471 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
TU311582 other upstream 323496 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 653373 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 818444 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1561986 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1775716 2672624 ~ 2681158 (+) True G274270
TU311605 other downstream 97804 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 466962 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 588722 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile