RNA id: TU311830


Basic Information

Item Value
RNA id TU311830
length 212
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G274849
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4466748 ~ 4466959 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCGAATGAATGCCGACCACTATCACGACACAATAAAACAGCATATCACCTCTTATTAACCATAAATTCAGTTCCCAAATTGAATAAATTCAACAATCTACAAATCAACATCCCTACAAATCTCTGAACATGCATCAGAGCGGGCTTCCTAAATTTATGTCAGCCAGCTGTTACGTGCCAAAACAAGCCTCCATCATACAATCCTTCATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311829 lncRNA upstream 3704 4462166 ~ 4463044 (+) True G274848
TU311828 lncRNA upstream 5141 4460588 ~ 4461607 (+) True G274847
TU311827 lncRNA upstream 7357 4459012 ~ 4459391 (+) True G274846
TU311826 lncRNA upstream 8094 4458414 ~ 4458654 (+) True G274845
TU311825 lncRNA upstream 8492 4457962 ~ 4458256 (+) True G274844
TU311831 lncRNA downstream 119 4467078 ~ 4467918 (+) True G274850
TU311832 lncRNA downstream 987 4467946 ~ 4468473 (+) True G274851
TU311835 lncRNA downstream 7300 4474259 ~ 4474515 (+) True G274854
TU311836 lncRNA downstream 7571 4474530 ~ 4474877 (+) True G274855
TU311837 lncRNA downstream 8249 4475208 ~ 4476085 (+) True G274856
CI01000069_04425809_04438936.mRNA mRNA upstream 27756 4423943 ~ 4438992 (+) False CI01000069_04425809_04438936
CI01000069_04412903_04419976.mRNA mRNA upstream 45560 4411235 ~ 4421188 (+) False CI01000069_04412903_04419976
CI01000069_04230190_04235064.mRNA mRNA upstream 231667 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
CI01000069_04203202_04214241.mRNA mRNA upstream 252423 4203202 ~ 4214325 (+) True CI01000069_04203202_04214241
CI01000069_04165021_04170544.mRNA mRNA upstream 296193 4164128 ~ 4170555 (+) True CI01000069_04165021_04170544
CI01000069_04527086_04527715.mRNA mRNA downstream 60042 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04556116_04558002.mRNA mRNA downstream 88310 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04562461_04568806.mRNA mRNA downstream 95502 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04612170_04623197.mRNA mRNA downstream 145211 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04773976_04774606.mRNA mRNA downstream 307017 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
TU311582 other upstream 333370 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 663247 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 828318 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1571860 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1785590 2672624 ~ 2681158 (+) True G274270
TU311605 other downstream 88350 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 457508 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 579268 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile