RNA id: TU311831


Basic Information

Item Value
RNA id TU311831
length 841
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G274850
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4467078 ~ 4467918 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAAGTAGAACAAGTGTGCCTGCCAGCGCTGTCATTACCCTTGGCTTCAATTAACATCGAATGAACATCACAACTAAAATAGCCTGATTTAAAGAAGCCAGCAGCAGCCGAGCAGAGCGGGTGCACATTAAAGTGTTTACTATATATTCCAACAAGCTATAGGGAGAGATATCCACTTGTTTGAGAGATCGTATGCATGAGAGGACACACACTGACAAGACTGAGCGATGTTTTCACAAGCAAATGAGGAGGGAGGTCTCGCTATTTCGAGTGAGCCGCAAGAGCCAGCTTTGCACGGATAGAGTGCGGTTCTCCTGGCGTCACTTAGAACTTTTTCTTGTAACGGCACTCGTTTGATTTTGAGCAACGACAACAATTACATCCTTTTGCTGCTGCGTGCAGTTTTTGAGTCTGACCCACAAATCCCTCTAACTCGAGCAGCCAAAACCAATCTCCTCTCAACATTTTTTTTATATTACTCCTCTCAGTGTGCATGAGATGTCTTTTTCAAGTGCAGCTACTTCAAAGCGAGGACGAGAGTCCCAGTGGGAACGAGGAGGAAGTAGAGAAGATAACATTGAAGTGTTTGGGGTGATGCACGTTCGCCAAGTTCCCTCCGCTGATCCGCAGGGGGACTGCTCTGAGAGGAGAAACCACATGCTTTCTTTTCTTATAAAGGATGTAAAGTACATGCTAATGAGCGAAAGAGACAATAAATAATTTGTGATGTTTTTTAGAAGCTGACAAGGCATTGTGGGGTCATTATGCTCCTTTTGATGTGAATCTGGTTTGCTTTTTGTTATTGAGAACTAATTAAACACCTTGTGAATTGCATTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311830 lncRNA upstream 119 4466748 ~ 4466959 (+) True G274849
TU311829 lncRNA upstream 4034 4462166 ~ 4463044 (+) True G274848
TU311828 lncRNA upstream 5471 4460588 ~ 4461607 (+) True G274847
TU311827 lncRNA upstream 7687 4459012 ~ 4459391 (+) True G274846
TU311826 lncRNA upstream 8424 4458414 ~ 4458654 (+) True G274845
TU311832 lncRNA downstream 28 4467946 ~ 4468473 (+) True G274851
TU311835 lncRNA downstream 6341 4474259 ~ 4474515 (+) True G274854
TU311836 lncRNA downstream 6612 4474530 ~ 4474877 (+) True G274855
TU311837 lncRNA downstream 7290 4475208 ~ 4476085 (+) True G274856
TU311838 lncRNA downstream 12546 4480464 ~ 4483539 (+) True G274857
CI01000069_04425809_04438936.mRNA mRNA upstream 28086 4423943 ~ 4438992 (+) False CI01000069_04425809_04438936
CI01000069_04412903_04419976.mRNA mRNA upstream 45890 4411235 ~ 4421188 (+) False CI01000069_04412903_04419976
CI01000069_04230190_04235064.mRNA mRNA upstream 231997 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
CI01000069_04203202_04214241.mRNA mRNA upstream 252753 4203202 ~ 4214325 (+) True CI01000069_04203202_04214241
CI01000069_04165021_04170544.mRNA mRNA upstream 296523 4164128 ~ 4170555 (+) True CI01000069_04165021_04170544
CI01000069_04527086_04527715.mRNA mRNA downstream 59083 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04556116_04558002.mRNA mRNA downstream 87351 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04562461_04568806.mRNA mRNA downstream 94543 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04612170_04623197.mRNA mRNA downstream 144252 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04773976_04774606.mRNA mRNA downstream 306058 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
TU311582 other upstream 333700 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 663577 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 828648 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1572190 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1785920 2672624 ~ 2681158 (+) True G274270
TU311605 other downstream 87391 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 456549 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 578309 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile