RNA id: TU311842


Basic Information

Item Value
RNA id TU311842
length 276
lncRNA type inter_gene
GC content 0.26
exon number 2
gene id G274860
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4485687 ~ 4486352 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCATTTTTTACTGGTCATTAAGGCCTTAATAATTATAAAAAAACAAAGATATGACATTCAAAGTATATAAGGTATTGCAACTAGATCTCTTTTATTGAATCCAAAAGGTTTTAATTATATTTTGCTACATATAAAGGTATTTTAAAGATTTTGAAGTGTCAAAATGTCGCTATAAAACATGGAAAATGTTGTAATATTTTAAAAACTTGTACTAAATATAAAATGTTTGATTTTCCTTTTGCTAGATAGCCAGCTAGATATCAGCCTGTTAGCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311840 lncRNA upstream 173 4484790 ~ 4485514 (+) True G274859
TU311839 lncRNA upstream 1241 4483880 ~ 4484446 (+) True G274858
TU311838 lncRNA upstream 2148 4480464 ~ 4483539 (+) True G274857
TU311837 lncRNA upstream 9602 4475208 ~ 4476085 (+) True G274856
TU311836 lncRNA upstream 10810 4474530 ~ 4474877 (+) True G274855
TU311654 lncRNA downstream 1058 4487410 ~ 4490369 (+) True G274691
TU311644 lncRNA downstream 6288 4492640 ~ 4497549 (+) True G274681
TU311612 lncRNA downstream 104516 4590868 ~ 4625092 (+) True G274649
TU311589 lncRNA downstream 112772 4599124 ~ 4602018 (+) True G274626
TU311877 lncRNA downstream 184237 4670589 ~ 4671103 (+) True G274893
CI01000069_04425809_04438936.mRNA mRNA upstream 46695 4423943 ~ 4438992 (+) False CI01000069_04425809_04438936
CI01000069_04412903_04419976.mRNA mRNA upstream 64499 4411235 ~ 4421188 (+) False CI01000069_04412903_04419976
CI01000069_04230190_04235064.mRNA mRNA upstream 250606 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
CI01000069_04203202_04214241.mRNA mRNA upstream 271362 4203202 ~ 4214325 (+) True CI01000069_04203202_04214241
CI01000069_04165021_04170544.mRNA mRNA upstream 315132 4164128 ~ 4170555 (+) True CI01000069_04165021_04170544
CI01000069_04527086_04527715.mRNA mRNA downstream 40649 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04556116_04558002.mRNA mRNA downstream 68917 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04562461_04568806.mRNA mRNA downstream 76109 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04612170_04623197.mRNA mRNA downstream 125818 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04773976_04774606.mRNA mRNA downstream 287624 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
TU311582 other upstream 352309 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 682186 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 847257 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1590799 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1804529 2672624 ~ 2681158 (+) True G274270
TU311605 other downstream 68957 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 438115 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 559875 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile