RNA id: TU313177


Basic Information

Item Value
RNA id TU313177
length 3050
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G276064
representative False

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4613854 ~ 4624902 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGAGTGAGTGTTGGCAGTGTTGCTGCCCATGAAGAACATTTCAAATGAACTATTTATGAAGCACTACTTTGGTTAGGATGCTGCCATTGGAGAAACTGTAGCTGTCTATCAAAACATCAATAGGTTTTTGAAACAGAGCTTTCTCTTCCCTCCTTACCATCAGCATGCAGAAATCAGGCAGATGACCAGTCATTCCAAACACAGTTGTCTTCAGGTACTTCTCATGGCCAGCAAGGTCAATAAAGGTAATGACTTTAGAAGACTTCTCACAGATCTTGGTCCAATCCAGGCTGCCTCCGTGACTGTCGGGTTTGTTGACTACCTGGCCCTCTTGATCAAATCCCAGGATGTCGTTACCCACGCTGCTGGTGCGCCCACTCTCCATTTCGTGCTTGTGCCTGAAGAGCTTCTGTCGCGCAAAGCCACGGCCATTATCCAACTCTCCATGAGTCAGCACCCCTAGCAGAGTGCTTTTACCGGCATCCACATTCCCCACTACAGCCACCCTGAGGAGAACACCATCATGACTGAGCTAGAAGTCCAAAATGGCTACACTCAATAAAGGCTCCAGACTAGTCTCAGCCTCAGACGGACCGTTGGCTGAACGTCTGATGCATATGGCACATTTATCTGGAAACACTTCAGGAGTTTCAAAGTTGTCATCTGGTTGGTTGAATTCGACAGGATGTCCGGGAGACGTGTGTGTTGCGTTCTTTAACAGTCCGCCTGGAAACAAATGCCATGGTGCCAAACACCCTCGTAGAAGAAGAACGCAGTCATGTTTACAACTGTGACAACCAGGATCAAATAAACGCTGGATTTTCAAAAGTATGTGAAGTTCGCGGCTCCATTGTTGCAGTAAACTTGCACAACGTTCTTGAATGAATAATTTATTAGATACATGCTGGTAGGGACATCGACTTTCATTTTCACGCCCCTAAACCTGACGCGGAACAAAACGAACTGTGATTGGTTACGTTACATGTCAGTCAAAGGTCCTCTTGGGCGGTCCTTGGCCAATGAAAGCTGCGATAGAGTCCAGACCTTCTGCCTTCTGAAGGTCTGTCTATGCGAGACTAGCTCCAGACTAACTTTTTTTACTAGGAGAACTGTAGCCCCTTACTGAAAATTTTAGGAGCACAAGCAGAAAATTTAGGGGCACACCTTAAATCGACCTGCAGCGCAGTTATTCACATTTCCCCCCATTTTGACTGTATTACTGACAAATGCCTTGGTAATAAATAGACTTAACTTACAATGTGCAGTTTTATTTTAAGTTTGCAAAGCTCCAGATTAACATTTGATGGCAGTATTATCATTCATAATGTCCAAATAATAATTCAAAAGCAAAACGATTGAAAATATATATTAGGGATTGGAAATGGCCGCCACCTACTGATTACAATGGTAATTTAATGTCTTTTTTATTTTTAAATAAGTGTGAGTTTTCCTACATGTTGAAACTTTTAGTTTTATAAAAAAAACCTATGAAGGATGAACAAATAATGTTTTGGTCATCACATTAAAAATAACATTTAGATATGATAATATTAGAGTTTTGAAGCGCTGGTAAAAGATGTGTAAAGTACTTGAAAGCATTTTACTTTTACTGCCAAACTGCTGTTACAGTTAGTGTTACTACATTAAATCCATGGCGAATGTTGTTAATCTGTGGACTGAAAGCCCTCTATAACTTGTTCATTCATGGCACAATGTTTCTCCTGGTTTCCACATCAGCACTGTTTGATCTGATATCTACGGTTAATAACGGAGAACTCTGCACTGAATTTGAATACTTCTCACTAGTTCTCGCAGCGATGTTATTAATTCTGTGGCGAATTCAAATCCTTTCTTTACTGGACCTCCCAGCGCTGTGTAGTAACACTGTCGCGTGATCAAGATCGGCTCTTGTGAGTAGCTCACGCCTCACGCTGCACTGACATTGGTCCAAACTAATAAACAGTCCGTGAAGCACAAATGAGTAGCACAGTTTCGTTCCGCTTTCATTACGTTGCCATTTGATGCAACGTTATGGTGGCCACGGCAAAAAAAAAAAAAAAAAAGAGGTTGCGACTGCTAACAAAATTTTGATCGCACCAGCAGGAAAAATGGTCGCAAAATGCGAGCATTTAGTCGCAGTCTGGAGCCCTGTGTTTTGTGTCAAAAAAAAAAAGAGATCACATTTAAGCAACCGAGAGTAGATGAGTCCCTTAAACTGCAAGAAAAGGCCACTTTCTCCATTGACGTCACTCACCTAACCTCCAAGAAGTCGGCTTCTCCCACCTGGCGGCGAATAAGGTAATCTCTGACCTGGCCACCAGCCTCAGTACGCTCCCTCAACAGGATGAGGTCCGCCTCGATCTGCTCACACATGGACCTTACTGTAGCCACAGACGCCTGCATATCACTGTCATTCAAACCATAGTCTCCTCCATCTGAAAGAGACAGAGACAAGCTGGTGTGTATTCATAAAATGAAATCTAAATTGAGTCTCCTGGGGTTCATTTCAGTGTCTTACCTGAACCCACCCCCAAGACATAGATGGTCTCCCCGCAGCCCTCGTCCATCCTCTCACGTAGTTGCCGTAGTAACAAGTCATACTGTTCTCCATTGGGACTGACCAGGGCTAGCTATGATGCAAAAAAAAAAAAAAAAGAGTCTTGTTACACAGAATGGTTGTGGATAAACAATCATCCTGTTTGTTTTGTTATCATCATAAAGACAGTACAAAGGCTCAATCTGACTTCATGTCAGTGTAAGAAAGGAACAGAGTCAGTGATCAATGGACTTGGAGAACAGTTTCCTGACTTTACTGCATGTTACATCAGATGTTATGAGGAGCAATGTTGCACAAGGTGGAGTGACGAAGCTTCATGCAAAACACTCTATAGCAGAAACAGAGCTCAGCTCCAGCCATATGAAAACTGATCCTCCCCTCAGTCTGAAACGGTCTGATGAATGATAAGGAGGCAGCTGCCACAGCAGAAAACATGAACACTCATCTGCCCCGGTTCCCACATCCATCAAGGTTAAGCACTGGTGGCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313159 lncRNA downstream 56190 4555209 ~ 4557664 (-) True G276052
TU313149 lncRNA downstream 85974 4527082 ~ 4527880 (-) True G276042
TU312866 lncRNA downstream 398164 4143168 ~ 4215690 (-) True G275770
TU312904 lncRNA downstream 404205 4207592 ~ 4209649 (-) True G275808
TU312853 lncRNA downstream 451439 4162063 ~ 4162415 (-) True G275757
TU313180 lncRNA upstream 5674 4623102 ~ 4624902 (-) True G276064
TU313251 lncRNA upstream 47742 4665170 ~ 4665413 (-) True G276129
TU313255 lncRNA upstream 51904 4669332 ~ 4669811 (-) True G276133
TU313216 lncRNA upstream 81843 4699271 ~ 4703469 (-) True G276094
TU313236 lncRNA upstream 86624 4704052 ~ 4710962 (-) True G276114
CI01000069_04603992_04607459.mRNA mRNA downstream 6268 4603099 ~ 4607586 (-) True CI01000069_04603992_04607459
CI01000069_04599199_04600481.mRNA mRNA downstream 13373 4599169 ~ 4600481 (-) True CI01000069_04599199_04600481
CI01000069_04595809_04598174.mRNA mRNA downstream 15680 4595750 ~ 4598174 (-) True CI01000069_04595809_04598174
CI01000069_04579172_04593867.mRNA mRNA downstream 19831 4578609 ~ 4594023 (-) True CI01000069_04579172_04593867
CI01000069_04574882_04576116.mRNA mRNA downstream 37726 4574366 ~ 4576128 (-) True CI01000069_04574882_04576116
CI01000069_04628032_04638137.mRNA mRNA upstream 10425 4627853 ~ 4638137 (-) True CI01000069_04628032_04638137
CI01000069_04692723_04695795.mRNA mRNA upstream 75064 4692492 ~ 4696567 (-) True CI01000069_04692723_04695795
CI01000069_04802439_04905601.mRNA mRNA upstream 184169 4801597 ~ 4905886 (-) True CI01000069_04802439_04905601
CI01000069_04919538_04930550.mRNA mRNA upstream 301591 4919019 ~ 4930550 (-) True CI01000069_04919538_04930550
CI01000069_04932463_04940554.mRNA mRNA upstream 314716 4932144 ~ 4941148 (-) False CI01000069_04932463_04940554
TU312842 other downstream 806777 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 844634 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1037519 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 1187480 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 1535686 2992504 ~ 3078168 (-) True G275699
TU313201 other upstream 322093 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 351867 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile