RNA id: TU311877


Basic Information

Item Value
RNA id TU311877
length 515
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G274893
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4670589 ~ 4671103 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATTTGTTCAGCTGATTGAAAACAACTTTTTCAATGATCTTGCCTATGGAAGGAAGATTTGAGATTGGTCTGTAGTTGCTCAATATGGTGTTATCCAGATTGCTCTTTTTCAGGAGGGGCTTAACAACTGCAGTTTTCATGGATTTTGGAAAAGTCCCAGAAAGAAATGAGGCGTTTACCACTTCTAGGAGATCTGCTTCTAAACAGTTAAACACGCTTTTGAAAAAAGATGTGGGAAGTGTGTCAAGGGCGCAGGTTGATGTTTTAAGGTGCTGTACTGTTTCTTCCAAAATGTTACCATCAATTGCTTCGAAATCAGACATAATAGTTACTTTCTGAGGTTGTGATCTGATCTGTTTTACCCCAGTGCAGCTCAAGGATGTGCTGATCGCCTTTCTGATATTATTGATTTTCTCAGAGAAGAAGGAAGCAAACTCACAGCATTTGCTGTCTGAAAGCATTTCACTGGGAATCTGACTTGGGGGGTTTGTTAGTCTCGCTACAGTAGCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311612 lncRNA upstream 45497 4590868 ~ 4625092 (+) True G274649
TU311589 lncRNA upstream 68571 4599124 ~ 4602018 (+) True G274626
TU311644 lncRNA upstream 173040 4492640 ~ 4497549 (+) True G274681
TU311654 lncRNA upstream 180220 4487410 ~ 4490369 (+) True G274691
TU311842 lncRNA upstream 184237 4485687 ~ 4486352 (+) True G274860
TU311881 lncRNA downstream 14073 4685176 ~ 4696072 (+) True G274897
TU311922 lncRNA downstream 95819 4766922 ~ 4767140 (+) True G274937
TU311923 lncRNA downstream 96429 4767532 ~ 4767747 (+) True G274938
TU311934 lncRNA downstream 157645 4828748 ~ 4831017 (+) True G274948
TU311958 lncRNA downstream 164467 4835570 ~ 4839648 (+) True G274964
CI01000069_04612170_04623197.mRNA mRNA upstream 47138 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04562461_04568806.mRNA mRNA upstream 101693 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04556116_04558002.mRNA mRNA upstream 112232 4555269 ~ 4558357 (+) False CI01000069_04556116_04558002
CI01000069_04527086_04527715.mRNA mRNA upstream 142775 4527001 ~ 4527814 (+) True CI01000069_04527086_04527715
CI01000069_04425809_04438936.mRNA mRNA upstream 231597 4423943 ~ 4438992 (+) False CI01000069_04425809_04438936
CI01000069_04773976_04774606.mRNA mRNA downstream 102873 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
CI01000069_04776672_04785162.mRNA mRNA downstream 104267 4775370 ~ 4785432 (+) True CI01000069_04776672_04785162
CI01000069_04791495_04792375.mRNA mRNA downstream 120248 4791351 ~ 4792680 (+) True CI01000069_04791495_04792375
CI01000069_04917103_04918567.mRNA mRNA downstream 246000 4917103 ~ 4918901 (+) True CI01000069_04917103_04918567
CI01000069_04981836_04982608.mRNA mRNA downstream 309856 4980959 ~ 4983096 (+) True CI01000069_04981836_04982608
TU311605 other upstream 112109 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311582 other upstream 537211 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 867088 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 1032159 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1775701 2892846 ~ 2892971 (+) True G274314
TU311947 other downstream 253364 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 375124 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile