RNA id: TU313216


Basic Information

Item Value
RNA id TU313216
length 4177
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G276094
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4699271 ~ 4703469 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAACAAAGGTCTTACGGGTGTGGAACGACATGAAGGTGAGTAATTAATGACATTATTTTTGGGTGAACTAACCCTTTAAAATGGAGAGTTCTCTGAAACTTTAAAAATTCTGTCATTTTCTCACCCTTGTGTCTTTTCAAACCTGTATGGCTTTCTTTTGTGTTCCACAGAAGAAAGACAAGGATGACATAGATAAATAAAAGATTTTTCATTATTGGGTGATAACGGATACATTTGAATGGCTGTCAGTAAAGAGAGAGTGTAGTTACAGCATCTACCAGCAGGGGCTAACCAACCAAACTAATTTTAGATCAGAAGTGCCCGAAGTTTTACTATGAAGGGCCACAAAAAAAAAAAAAAAATCAAGCTTGATTAATGGCCATGGGCTGAAACTAAATGTTGCATATCCAACAATATTAAATGAATTTGCATTTAAAAATATCAAATTCACTTGTAATGTCTACATTTTAATGCAAAAATATAGCATGGCAGGCCAAATCACAAATCAAATGTCATCAGGGGGCAACTTTGGCCCACGGCCCCTGGTTTGTACATCTCTGGTTTAGATAATACTGTCACGTGTTTGTGTTTTGTCAGCCTCCTTCATTTGATCAACTAACAACTGATTGGTGGAAAGACATTTTAAGACAATTTAGAATAAACATGCACAGTCACTTCTCTACACTAATATGTGTTATTCTATTTTAAAAGGAAAAATTAAATTAAGTTATCTTACGAATGAACATAGACAAACTATTAGTGGTCTACTGATACATTGCAAATGCTGATATATCAACCAACATTTGGCATTTTTTTTAATTATGGCTCATTCATTCATCTTAATTAGTTAATGATCTTTAAATGATCTTCTAATAATTGAAAGGCAAACTTTTTTAATTCACTGTCATCATTCAGCAGCTTTTATATAAATTAAACAAGTCTTTGAATATTTAATAAACATTTAAAAAGTGTGATATAGCATATATCCGTTTTTGGGCCACCATGATCTTTAGGATATGGGTATTGGCGTTGGAAAAGCTTATTGTATATTGAATTCAGTAGCTACAATAAGTTACATTTAGTTACTGTGATTGATTCCTACCATCCAAAATCTACATTCATGCATATGAAAGACTACATACAAGCACACACCTAGTTCACTCGCACAATATCTCTAAAGCTTGCAGCGGTCTTTAACTCAGGCCTTTCTATTTGTGGGGGATGCAAATTGTGTCCACGCTCCATATTTAAACTTTTCAGAATTTTGCATGCTCAAATCCACAGTGTGTTCTGCTGTTGGAATGTATCCAATGGAAATAGCCAGATAGAATAAAACCACACACAGCTCTCCGCACAGCAATCTGAATGTGTAATAAAATGTTTAATTCATGACCACTATAAACACATATCCTTGTACAGCAATCGACTCCACAGGGGATCGCTAACAAACGATTCTCGGTATAGGCCGTTCGTAATTGCATTCTGAGTGTGTGTGTGTGTGTGTGTGTGTGCATGTTTGTGTGTTTGCGTACACCCCAGACATCCCGTACGCCTGACACCTGCAGGTCTGAGCTCTCGCCGCTCCTGTGATTCTTAACCCTGCCAACTAGTTTGGTGAGCTACTGTATCATTTGTTATCCCTGTCTTTCCTCGCTCTTGCTGGCACATTCCCCAGAGCACCGGCACTATGATGGAGACACTAGACTCACATTAACTCCAGGGTGAATTAAGCAACTATATCCGTGTGCGGGACCAACAAATCTCTTTACCTCACACACTTGTCCACTGAGTCCCACTCCCCTCCGCCCATGCAGGGGCCCTAAGTTAGTTTTTTCCTTTAATATAAGAGCCCAAATATCCTTGTAATCCTCCCTTCTCCTCTCCCCAACCTCCCTGGCTGCACCCTCCTGTAATTGAAAAATGGCAGGCGAGGAGATTAAGCAAGGCTTATCCCTCTGAGGTGTGTGTTTTATCGCGCAGCAGCAAACAGCAATCTCTCCTCCGCCCTCGTCCACAGGAAACTTTTGCCTTCCTTTCTGTACTCACTCTTTCCTGCCTCCTTGCTCTCTCTCTCCCTCTCTTTGGCTCTGTAGTGATGCTAGTCTAGTGGAGAGCCTCTGTTAGCGCTGTTGTCTGAATTCAAAATGCCTTATTTGTCTTTCGGACCCCCACCACCTCATCACTAAGGCTTAAGTACCTGTTCGTGGACGTCAAATCTGAAATGTTCTTTTAAAGTGGGCATGAAAGGAAGTTGCAGTAGTCTTTTCTTCCCTATTGTGGCATATATCCGAGTAAAAAAAGTTACTCAAACAAGAAAAATGTAACTTGGACTTGGACTTGATTTTGTCCATTGGGAATTGATTGGATCATTGAATGGTTGTGGTTTGCTATCGCTGTGATGTCATGTGAGTGACAGGTTGTCCTGACCTCACGCCAGTAAACACGTCATCGAAATCTGCATTTCCACCACATGAACTTTCCCCAGGAACTATGGACTTTGGGGGTGGTACTTGGTGTGTTTCAACCGCAGGGACCGGGGTCTAAATGAAGAAAAAATTTCCCTCTCAGAAAGTCCCTGCTCGTGAAGTAGTTCAGGAACTTTTGGGGATGGGACTTGGGCGCTGAACATGCTTATTGGTTGAGTTCACGCAGCATTTTGATTGGTTGACTCCACGCAGCATTTTATTTCAACCACCATTTTTAAAAGTCGGTTGCGGTGCAGTAAGAGTTGTTTGCTATTAGAATCAACAATTGAGTTTAAAAAATATGACCGATGGACAGACAACGAGATTCAGGCTTTGTTAAGCTTATATGCGAAGGACGAAATCCATTTCCTGGGACAAATTGTTCCAGGTAATTTCGGTGGAAACACGCCTAGAAAAAAGATGTCGCTGCAAGAGAGGGGAAGTTATTTTGATTTAAGATTACGATGGCATGTGAATTTACTAAAAAATAGTGATGTGCACAGATAAATAATTTTAGATAAATACTGCAATATTCCATAAAAAAAATAATCAATTTTGATTTCATGGTGACTTTAAACTTACAGTATATTGTACTGGATATCATTTAGCATTATACAACAGTTAGTTCTGGTCCTCCAATTTGATTGGCTGAGCGGTGTTCCTGACAGACTATAAGTCTCAGTATTAGTGGTAGGTCAAAATAACTGGCAGTATTGTGTCTAAAATTGTTGCTCATTATTAAAGAAGCAATGGTAGGAGAATGGCTAGTTTGCACATCTTGAAACTCTGCATGTCAAAAGATCACATCCAATTTGAATCTTATAAACGCACACATCAACCTGATCACTTCATTTAGCATTCATGTAAACATGTTCAGATTCACAAATCAAAATTGGGATGATGGCCATAATGATGGACAGAGGATGATGGGGTTACACCCCTTCTCTTTTTTTGAAGGACCTTGGTTTAACGTCTCATCCAAAGGATGGTGCTTTTTGACAGTATAGTGTCCCCATCACTATACTGGGCCACTAGGACCTACACAGACCACAGGGTGCTGGCCCACCCCCTGCTGGCCTCACTAGCACCTCTTCCAGCAGCAACCTAGTTTTCCCCAGCAGGTCTCCCATTCAGGTACTGACCAGGTTCAATCCTGTTTAGCTTTAGTGTGCGACCAGGTGAGAGCTGCAGAGTGAAAGCTGCATTATTTCCTTTCTAAGCAACAGTTTTTGCCTGACAAATTATAAAAATCCAGGAAAAAAAGGGCAGAGACCTGCTGGCAAACCAGCTAAATGAGCAAAATTTGGCTTGGCAGAGAGACCTGTGAAGACCAGAAAAGACCAGCAAACCACCTCAGGCTGTTTTTTTTTTCTTTTTCATGTTATGATTTAGAAGATTCTGACTGCCTCATATTGTGTGTATTTCTTGAAGCATTTGGATGACCACAGCCTGCAGCTCTTCTCCTTGAGCAGCGTGGGAATCAGATGCCACAAGTATTTTTTTTTTATTACACTTCAGATGATGCACCAGAAGGCAGTGGTTTTGCTACTAAGTGAGAGAGAGAAATGGAGAGATTAATGAAAAAATGGTGTTTTTTACATTACGATTACTTTTTTCCTTTTGTAGTGTCGTAGAACATTTCACTACTACACATTAAAGGGATAGTTCACCCAAAAATGAAAATTTGATGTTTATCTGCTTACCCCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313255 lncRNA downstream 29460 4669332 ~ 4669811 (-) True G276133
TU313251 lncRNA downstream 33858 4665170 ~ 4665413 (-) True G276129
TU313180 lncRNA downstream 74369 4623102 ~ 4624902 (-) True G276064
TU313181 lncRNA downstream 75534 4616929 ~ 4623737 (-) False G276064
TU313179 lncRNA downstream 78017 4613854 ~ 4621254 (-) False G276064
TU313236 lncRNA upstream 583 4704052 ~ 4710962 (-) True G276114
TU313192 lncRNA upstream 87913 4791382 ~ 4792803 (-) False G276071
TU313193 lncRNA upstream 87913 4791382 ~ 4792703 (-) True G276071
TU313229 lncRNA upstream 300910 5004379 ~ 5009473 (-) True G276107
TU313318 lncRNA upstream 355864 5059333 ~ 5059568 (-) True G276193
CI01000069_04692723_04695795.mRNA mRNA downstream 2704 4692492 ~ 4696567 (-) True CI01000069_04692723_04695795
CI01000069_04628032_04638137.mRNA mRNA downstream 61134 4627853 ~ 4638137 (-) True CI01000069_04628032_04638137
CI01000069_04603992_04607459.mRNA mRNA downstream 91685 4603099 ~ 4607586 (-) True CI01000069_04603992_04607459
CI01000069_04599199_04600481.mRNA mRNA downstream 98790 4599169 ~ 4600481 (-) True CI01000069_04599199_04600481
CI01000069_04595809_04598174.mRNA mRNA downstream 101097 4595750 ~ 4598174 (-) True CI01000069_04595809_04598174
CI01000069_04802439_04905601.mRNA mRNA upstream 98128 4801597 ~ 4905886 (-) True CI01000069_04802439_04905601
CI01000069_04919538_04930550.mRNA mRNA upstream 215550 4919019 ~ 4930550 (-) True CI01000069_04919538_04930550
CI01000069_04932463_04940554.mRNA mRNA upstream 228675 4932144 ~ 4941148 (-) False CI01000069_04932463_04940554
CI01000069_04942590_04973602.mRNA mRNA upstream 238942 4942411 ~ 4973663 (-) False CI01000069_04942590_04973602
CI01000069_04983344_04983640.mRNA mRNA upstream 279853 4983322 ~ 4983640 (-) True CI01000069_04983344_04983640
TU312842 other downstream 892194 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 930051 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1122936 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 1272897 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 1621103 2992504 ~ 3078168 (-) True G275699
TU313201 other upstream 236052 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 265826 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044475 True 117 rRNA 0.54 1 NC_007134.7 36828472 ~ 36828588 (-)