RNA id: TU311958



Basic Information


Item Value
RNA id TU311958
length 609
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G274964
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4835570 ~ 4839648 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTAGGTTGCATACTTCTTTGTATGTGTATAATTTTACCTTGAAAGACTGGACGAAGGTCCAGAGCAGGATGCGTATGGTTTCACCCTGCCTGAGCAACTTAATGAGACGAGCAGCTCTGAAGAGCCTTAGAAAACTCAGATTTATGAAATTGTTCACCCCTAGCTCTGTGACTAAAATATCAGTGATGCTGCCAAGTACAGTCACACAGTCGAAGATGTTCCAGGCGTCTTTGAAGTAGTTCTGTGGTAAAAAGACACAGATGCGTTTGTCAGTTGGGCTAAAGGAGGATTACGTTTGGCACACACACATATACTCAGTGACCCGCTGGCAGAAAAACAAGCAAACGATTTATTTTAACTCTCTGGTGCTAATAAAACAGCTCCCGTGCCCATTTCAGCCCTTATTCCTTCCCTGTGTTTTCCTCTCCCTCACACTGTGCACAAAAAAGGGTGGATGCCTAGAAGACTAGTGGCCCAGATGCTGAACATAACAGCCTTTTTGTGAGCTGCCAAGTGAGTGCCTGCAGGAAAACACTGCATTAGAGCCATTCAGTACACCAGCTGCATTATAACAGGACATGGAAAGAGTCACACACACACACACACACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU311934 lncRNA upstream 4553 4828748 ~ 4831017 (+) True G274948
TU311923 lncRNA upstream 67823 4767532 ~ 4767747 (+) True G274938
TU311922 lncRNA upstream 68430 4766922 ~ 4767140 (+) True G274937
TU311881 lncRNA upstream 139498 4685176 ~ 4696072 (+) True G274897
TU311877 lncRNA upstream 164467 4670589 ~ 4671103 (+) True G274893
TU311970 lncRNA downstream 8374 4848022 ~ 4851034 (+) True G274976
TU311971 lncRNA downstream 14685 4854333 ~ 4854569 (+) True G274977
TU311961 lncRNA downstream 15758 4855406 ~ 4855607 (+) True G274967
TU311959 lncRNA downstream 17672 4857320 ~ 4857761 (+) True G274965
TU311957 lncRNA downstream 18655 4858303 ~ 4858782 (+) True G274963
CI01000069_04791495_04792375.mRNA mRNA upstream 42890 4791351 ~ 4792680 (+) True CI01000069_04791495_04792375
CI01000069_04776672_04785162.mRNA mRNA upstream 50138 4775370 ~ 4785432 (+) True CI01000069_04776672_04785162
CI01000069_04773976_04774606.mRNA mRNA upstream 60611 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
CI01000069_04612170_04623197.mRNA mRNA upstream 212119 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04562461_04568806.mRNA mRNA upstream 266674 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04917103_04918567.mRNA mRNA downstream 77455 4917103 ~ 4918901 (+) True CI01000069_04917103_04918567
CI01000069_04981836_04982608.mRNA mRNA downstream 141311 4980959 ~ 4983096 (+) True CI01000069_04981836_04982608
CI01000069_04990240_04994522.mRNA mRNA downstream 149087 4988735 ~ 4994869 (+) True CI01000069_04990240_04994522
CI01000069_05002707_05021316.mRNA mRNA downstream 163059 5002707 ~ 5023082 (+) False CI01000069_05002707_05021316
CI01000069_05033299_05034403.mRNA mRNA downstream 193651 5033299 ~ 5034605 (+) True CI01000069_05033299_05034403
TU311605 other upstream 277090 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311582 other upstream 702192 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 1032069 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 1197140 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1940682 2892846 ~ 2892971 (+) True G274314
TU311947 other downstream 84819 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 206579 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile