RNA id: TU311971


Basic Information

Item Value
RNA id TU311971
length 237
lncRNA type intronic
GC content 0.42
exon number 1
gene id G274977
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4854333 ~ 4854569 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATTTTAAAATTTCCTGACTTTCCAGGTTTAATCATGGGAACCCCATGCAACTCTTATTGGTAATGTGGAGACCACTAAACACACCATTAAATGTGCAATAAGACATTTTTGAGAAATGCTGTTGAAAGTGGATCGGACCGAGCAGCACAACACACTTGGAGCCAATCACCAGTAGGGGGTGTGTCCACTCATGATGGGGGAGGAGAGAGAGAAATTTGAGATTTGAAGAAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311970 lncRNA upstream 3299 4848022 ~ 4851034 (+) True G274976
TU311958 lncRNA upstream 14685 4835570 ~ 4839648 (+) True G274964
TU311934 lncRNA upstream 23316 4828748 ~ 4831017 (+) True G274948
TU311923 lncRNA upstream 86586 4767532 ~ 4767747 (+) True G274938
TU311922 lncRNA upstream 87193 4766922 ~ 4767140 (+) True G274937
TU311961 lncRNA downstream 837 4855406 ~ 4855607 (+) True G274967
TU311959 lncRNA downstream 2751 4857320 ~ 4857761 (+) True G274965
TU311957 lncRNA downstream 3734 4858303 ~ 4858782 (+) True G274963
TU311963 lncRNA downstream 4801 4859370 ~ 4859591 (+) True G274969
TU311972 lncRNA downstream 5662 4860231 ~ 4860440 (+) True G274978
CI01000069_04791495_04792375.mRNA mRNA upstream 61653 4791351 ~ 4792680 (+) True CI01000069_04791495_04792375
CI01000069_04776672_04785162.mRNA mRNA upstream 68901 4775370 ~ 4785432 (+) True CI01000069_04776672_04785162
CI01000069_04773976_04774606.mRNA mRNA upstream 79374 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
CI01000069_04612170_04623197.mRNA mRNA upstream 230882 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04562461_04568806.mRNA mRNA upstream 285437 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04917103_04918567.mRNA mRNA downstream 62534 4917103 ~ 4918901 (+) True CI01000069_04917103_04918567
CI01000069_04981836_04982608.mRNA mRNA downstream 126390 4980959 ~ 4983096 (+) True CI01000069_04981836_04982608
CI01000069_04990240_04994522.mRNA mRNA downstream 134166 4988735 ~ 4994869 (+) True CI01000069_04990240_04994522
CI01000069_05002707_05021316.mRNA mRNA downstream 148138 5002707 ~ 5023082 (+) False CI01000069_05002707_05021316
CI01000069_05033299_05034403.mRNA mRNA downstream 178730 5033299 ~ 5034605 (+) True CI01000069_05033299_05034403
TU311605 other upstream 295853 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311582 other upstream 720955 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 1050832 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 1215903 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1959445 2892846 ~ 2892971 (+) True G274314
TU311947 other downstream 69898 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 191658 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile