RNA id: TU311961


Basic Information

Item Value
RNA id TU311961
length 202
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G274967
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4855406 ~ 4855607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCTCACATTATTGCGGGGGGATTCGGGCCAGACAGGGTCTTCAGCGGCCAGGGCAATACTGCTCATCGCAATGACCAGCAGAATACACATCTCAAAATATCTGAGCGTGACAATATAGTGGCACAACCTCCGAAATCTACAACACAAGTTCAAAAAATAGACCAGTTAATAGCAAAAACAACAACTACATCAATTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311971 lncRNA upstream 837 4854333 ~ 4854569 (+) True G274977
TU311970 lncRNA upstream 4372 4848022 ~ 4851034 (+) True G274976
TU311958 lncRNA upstream 15758 4835570 ~ 4839648 (+) True G274964
TU311934 lncRNA upstream 24389 4828748 ~ 4831017 (+) True G274948
TU311923 lncRNA upstream 87659 4767532 ~ 4767747 (+) True G274938
TU311959 lncRNA downstream 1713 4857320 ~ 4857761 (+) True G274965
TU311957 lncRNA downstream 2696 4858303 ~ 4858782 (+) True G274963
TU311963 lncRNA downstream 3763 4859370 ~ 4859591 (+) True G274969
TU311972 lncRNA downstream 4624 4860231 ~ 4860440 (+) True G274978
TU311973 lncRNA downstream 5500 4861107 ~ 4861338 (+) True G274979
CI01000069_04791495_04792375.mRNA mRNA upstream 62726 4791351 ~ 4792680 (+) True CI01000069_04791495_04792375
CI01000069_04776672_04785162.mRNA mRNA upstream 69974 4775370 ~ 4785432 (+) True CI01000069_04776672_04785162
CI01000069_04773976_04774606.mRNA mRNA upstream 80447 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
CI01000069_04612170_04623197.mRNA mRNA upstream 231955 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04562461_04568806.mRNA mRNA upstream 286510 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04917103_04918567.mRNA mRNA downstream 61496 4917103 ~ 4918901 (+) True CI01000069_04917103_04918567
CI01000069_04981836_04982608.mRNA mRNA downstream 125352 4980959 ~ 4983096 (+) True CI01000069_04981836_04982608
CI01000069_04990240_04994522.mRNA mRNA downstream 133128 4988735 ~ 4994869 (+) True CI01000069_04990240_04994522
CI01000069_05002707_05021316.mRNA mRNA downstream 147100 5002707 ~ 5023082 (+) False CI01000069_05002707_05021316
CI01000069_05033299_05034403.mRNA mRNA downstream 177692 5033299 ~ 5034605 (+) True CI01000069_05033299_05034403
TU311605 other upstream 296926 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311582 other upstream 722028 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 1051905 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 1216976 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1960518 2892846 ~ 2892971 (+) True G274314
TU311947 other downstream 68860 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 190620 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile