RNA id: TU311992


Basic Information

Item Value
RNA id TU311992
length 233
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G274997
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4915853 ~ 4916085 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAATATACGTTGTGTCATATTGGAAGAACGTTGTTGACCATACTGATTGGAAAAAAGTATGGATTCTGCCTTTGAAATGCATAATAACTTACAAGGTTAGAGAAATCTTATTTACGTAGATTTTACACGGCTAAAGCATGCTTAAAAAGGTTTAAGTCAGAAGTAGACACAAGCTCCTCTTTTTGTGGTGGCCCTAAAGAAACTGCTCTTCACGTCTTCTGGGACTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311988 lncRNA upstream 7984 4907477 ~ 4907869 (+) True G274993
TU311986 lncRNA upstream 18842 4896210 ~ 4897011 (+) True G274991
TU311973 lncRNA upstream 54515 4861107 ~ 4861338 (+) True G274979
TU311972 lncRNA upstream 55413 4860231 ~ 4860440 (+) True G274978
TU311963 lncRNA upstream 56262 4859370 ~ 4859591 (+) True G274969
TU311936 lncRNA downstream 26270 4942355 ~ 4943984 (+) False G274950
TU311937 lncRNA downstream 26270 4942355 ~ 4965635 (+) False G274950
TU311938 lncRNA downstream 26270 4942355 ~ 4965635 (+) False G274950
TU311939 lncRNA downstream 26270 4942355 ~ 4943984 (+) False G274950
TU311940 lncRNA downstream 26270 4942355 ~ 4965635 (+) False G274950
CI01000069_04791495_04792375.mRNA mRNA upstream 123173 4791351 ~ 4792680 (+) True CI01000069_04791495_04792375
CI01000069_04776672_04785162.mRNA mRNA upstream 130421 4775370 ~ 4785432 (+) True CI01000069_04776672_04785162
CI01000069_04773976_04774606.mRNA mRNA upstream 140894 4773976 ~ 4774959 (+) True CI01000069_04773976_04774606
CI01000069_04612170_04623197.mRNA mRNA upstream 292402 4612170 ~ 4623451 (+) True CI01000069_04612170_04623197
CI01000069_04562461_04568806.mRNA mRNA upstream 346957 4562461 ~ 4568896 (+) True CI01000069_04562461_04568806
CI01000069_04917103_04918567.mRNA mRNA downstream 1018 4917103 ~ 4918901 (+) True CI01000069_04917103_04918567
CI01000069_04981836_04982608.mRNA mRNA downstream 64874 4980959 ~ 4983096 (+) True CI01000069_04981836_04982608
CI01000069_04990240_04994522.mRNA mRNA downstream 72650 4988735 ~ 4994869 (+) True CI01000069_04990240_04994522
CI01000069_05002707_05021316.mRNA mRNA downstream 86622 5002707 ~ 5023082 (+) False CI01000069_05002707_05021316
CI01000069_05033299_05034403.mRNA mRNA downstream 117214 5033299 ~ 5034605 (+) True CI01000069_05033299_05034403
TU311605 other upstream 357373 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311582 other upstream 782475 4129128 ~ 4133378 (+) True G274619
TU311564 other upstream 1112352 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 1277423 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 2020965 2892846 ~ 2892971 (+) True G274314
TU311947 other downstream 8382 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 130142 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile